Information for 3-GAAAGTGCACACT (Motif 4)

A C T G T C G A C T G A C G T A A C T G A C G T T A C G G T A C C G T A A T G C T C G A A G T C A C G T
Reverse Opposite:
G T C A C T A G A G C T A T C G A C G T A C T G A G T C G T C A A G T C G C A T A G C T A C G T A G T C
p-value:1e-16
log p-value:-3.903e+01
Information Content per bp:1.778
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.9 +/- 27.9bp
Average Position of motif in Background65.1 +/- 10.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0026.1_Gm397_1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GAAAGTGCACACT--
NNGTATGTGCACATNNN
 A C G T A C G T A C T G T C G A C T G A C G T A A C T G A C G T T A C G G T A C C G T A A T G C T C G A A G T C A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAAAGTGCACACT---
TACATGTGCACATAAAA
 A C G T A C T G T C G A C T G A C G T A A C T G A C G T T A C G G T A C C G T A A T G C T C G A A G T C A C G T A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAAAGTGCACACT
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A C T G T C G A C T G A C G T A A C T G A C G T T A C G G T A C C G T A A T G C T C G A A G T C A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAAAGTGCACACT----
-NNTTTGCACACGGCCC
 A C T G T C G A C T G A C G T A A C T G A C G T T A C G G T A C C G T A A T G C T C G A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAAAGTGCACACT--
CGAACAGTGCTCACTAT
 A C G T A C G T A C T G T C G A C T G A C G T A A C T G A C G T T A C G G T A C C G T A A T G C T C G A A G T C A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAAAGTGCACACT
-AAAGTAAACA--
 A C T G T C G A C T G A C G T A A C T G A C G T T A C G G T A C C G T A A T G C T C G A A G T C A C G T
A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAAAGTGCACACT
-AAAGTAAACA--
 A C T G T C G A C T G A C G T A A C T G A C G T T A C G G T A C C G T A A T G C T C G A A G T C A C G T
A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GAAAGTGCACACT
GAAAGTGAAAGT-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C G A C T G A C G T A A C T G A C G T T A C G G T A C C G T A A T G C T C G A A G T C A C G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAAAGTGCACACT
GAAAGTGAAAGT-
 A C T G T C G A C T G A C G T A A C T G A C G T T A C G G T A C C G T A A T G C T C G A A G T C A C G T
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T

IRF2/MA0051.1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAAAGTGCACACT----
GGAAAGCGAAACCAAAAC
 A C G T A C T G T C G A C T G A C G T A A C T G A C G T T A C G G T A C C G T A A T G C T C G A A G T C A C G T A C G T A C G T A C G T A C G T
A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C