Information for 17-AGGGCAGNYCCCA (Motif 40)

C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A G C T A G T C A G T C A G T C C G T A
Reverse Opposite:
C G A T A C T G C T A G A C T G C T G A C G T A A G T C A C G T C T A G A G T C A G T C A G T C A C G T
p-value:1e-6
log p-value:-1.534e+01
Information Content per bp:1.848
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif28.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets58.2 +/- 28.0bp
Average Position of motif in Background54.8 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFKB2/MA0778.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGGGCAGNYCCCA
AGGGGAATCCCCT
 C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A G C T A G T C A G T C A G T C C G T A
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGGCAGNYCCCA
AGGGGAATCCCCT
 C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A G C T A G T C A G T C A G T C C G T A
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGGGCAGNYCCCA
-GGGAAATCCCCN
 C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A G C T A G T C A G T C A G T C C G T A
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCAGNYCCCA
TNNGGGCAG------
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A G C T A G T C A G T C A G T C C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGGCAGNYCCCA
GGGGGAATCCCC-
 C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A G C T A G T C A G T C A G T C C G T A
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AGGGCAGNYCCCA
NNNNTTGGGCACNNCN--
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A G C T A G T C A G T C A G T C C G T A
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGGGCAGNYCCCA
--GGAAATCCCC-
 C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A G C T A G T C A G T C A G T C C G T A
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGGGCAGNYCCCA
CAAAGGTCAG------
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A G C T A G T C A G T C A G T C C G T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAGNYCCCA
TRAGGTCA-------
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A G C T A G T C A G T C A G T C C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGGGCAGNYCCCA
--GGAAATTCCC-
 C G T A A C T G A C T G A C T G A G T C C G T A A C T G A C G T A G C T A G T C A G T C A G T C C G T A
A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T