Information for 19-TKSCTGKMAMYTGAGS (Motif 30)

A C G T A C T G A T G C A G T C A C G T A C T G C A G T G T A C C G T A G T A C A G T C A G C T C T A G C T G A A C T G A T G C
Reverse Opposite:
A T C G A G T C A G C T A G T C C T G A C T A G C A T G A C G T A C T G G T A C A G T C C G T A A C T G A T C G T G A C C G T A
p-value:1e-7
log p-value:-1.807e+01
Information Content per bp:1.809
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.0 +/- 29.6bp
Average Position of motif in Background41.4 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:TKSCTGKMAMYTGAGS-
-----GWAAYHTGABMC
 A C G T A C T G A T G C A G T C A C G T A C T G C A G T G T A C C G T A G T A C A G T C A G C T C T A G C T G A A C T G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TKSCTGKMAMYTGAGS
CTGTCTGTCACCT----
 A C G T A C G T A C T G A T G C A G T C A C G T A C T G C A G T G T A C C G T A G T A C A G T C A G C T C T A G C T G A A C T G A T G C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:3
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TKSCTGKMAMYTGAGS-
-----GWAAYHTGAKMC
 A C G T A C T G A T G C A G T C A C G T A C T G C A G T G T A C C G T A G T A C A G T C A G C T C T A G C T G A A C T G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TKSCTGKMAMYTGAGS
--GCTGTCAA------
 A C G T A C T G A T G C A G T C A C G T A C T G C A G T G T A C C G T A G T A C A G T C A G C T C T A G C T G A A C T G A T G C
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TKSCTGKMAMYTGAGS
TGTCTGDCACCT----
 A C G T A C T G A T G C A G T C A C G T A C T G C A G T G T A C C G T A G T A C A G T C A G C T C T A G C T G A A C T G A T G C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TKSCTGKMAMYTGAGS
-VGCTGWCAVB-----
 A C G T A C T G A T G C A G T C A C G T A C T G C A G T G T A C C G T A G T A C A G T C A G C T C T A G C T G A A C T G A T G C
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TKSCTGKMAMYTGAGS
NNCTTCCNGGAAGN-----
 A C G T A C G T A C G T A C G T A C T G A T G C A G T C A C G T A C T G C A G T G T A C C G T A G T A C A G T C A G C T C T A G C T G A A C T G A T G C
A T G C T C G A A G T C A G C T A C G T G T A C A G T C G C T A C T A G C A T G G T C A C T G A T C A G A G T C A C G T A C G T A C G T A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TKSCTGKMAMYTGAGS
CTTCCNGGAA-------
 A C G T A C G T A C T G A T G C A G T C A C G T A C T G C A G T G T A C C G T A G T A C A G T C A G C T C T A G C T G A A C T G A T G C
A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TKSCTGKMAMYTGAGS
--CCTGTCAA------
 A C G T A C T G A T G C A G T C A C G T A C T G C A G T G T A C C G T A G T A C A G T C A G C T C T A G C T G A A C T G A T G C
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TKSCTGKMAMYTGAGS
--CCGGTCACGTGA--
 A C G T A C T G A T G C A G T C A C G T A C T G C A G T G T A C C G T A G T A C A G T C A G C T C T A G C T G A A C T G A T G C
A C G T A C G T A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A A C G T A C G T