Information for 5-AAAATGAAGATTCTTC (Motif 7)

T G C A C G T A G T C A C T G A A C G T A T C G C G T A C G T A C T A G C T G A A G C T G C A T T G A C G A C T A C G T G A T C
Reverse Opposite:
C T A G C G T A C T G A A C T G C G T A C T G A A G C T A G T C A C G T C G A T A T G C C G T A A G C T A C G T A C G T A C G T
p-value:1e-16
log p-value:-3.773e+01
Information Content per bp:1.783
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.6 +/- 18.5bp
Average Position of motif in Background90.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAAATGAAGATTCTTC
CTCATGAATATTCAT-
 T G C A C G T A G T C A C T G A A C G T A T C G C G T A C G T A C T A G C T G A A G C T G C A T T G A C G A C T A C G T G A T C
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAAATGAAGATTCTTC
AAAAAATCAATAAT----
 A C G T A C G T T G C A C G T A G T C A C T G A A C G T A T C G C G T A C G T A C T A G C T G A A G C T G C A T T G A C G A C T A C G T G A T C
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AAAATGAAGATTCTTC
---ATGAATATTC---
 T G C A C G T A G T C A C T G A A C G T A T C G C G T A C G T A C T A G C T G A A G C T G C A T T G A C G A C T A C G T G A T C
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

ONECUT1/MA0679.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAAATGAAGATTCTTC
AAAAAATCGATAAT----
 A C G T A C G T T G C A C G T A G T C A C T G A A C G T A T C G C G T A C G T A C T A G C T G A A G C T G C A T T G A C G A C T A C G T G A T C
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T A C G T A C G T A C G T A C G T

ONECUT2/MA0756.1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAAATGAAGATTCTTC
AAAAAATCGATAAT----
 A C G T A C G T T G C A C G T A G T C A C T G A A C G T A T C G C G T A C G T A C T A G C T G A A G C T G C A T T G A C G A C T A C G T G A T C
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AAAATGAAGATTCTTC
-AYATGYATATGCATR
 T G C A C G T A G T C A C T G A A C G T A T C G C G T A C G T A C T A G C T G A A G C T G C A T T G A C G A C T A C G T G A T C
A C G T C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AAAATGAAGATTCTTC
---ATGMATATDC---
 T G C A C G T A G T C A C T G A A C G T A T C G C G T A C G T A C T A G C T G A A G C T G C A T T G A C G A C T A C G T G A T C
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----AAAATGAAGATTCTTC
ANTNNTACATGTANNTN----
 A C G T A C G T A C G T A C G T A C G T T G C A C G T A G T C A C T G A A C G T A T C G C G T A C G T A C T A G C T G A A G C T G C A T T G A C G A C T A C G T G A T C
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AAAATGAAGATTCTTC
-ATATGCAAATNNN--
 T G C A C G T A G T C A C T G A A C G T A T C G C G T A C G T A C T A G C T G A A G C T G C A T T G A C G A C T A C G T G A T C
A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AAAATGAAGATTCTTC
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T T G C A C G T A G T C A C T G A A C G T A T C G C G T A C G T A C T A G C T G A A G C T G C A T T G A C G A C T A C G T G A T C
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C