Information for 9-AAGGCAAGCA (Motif 28)

G T C A C T G A C T A G A C T G A G T C C G T A C G T A C T A G G T A C C G T A
Reverse Opposite:
A C G T A C T G A G T C G C A T A C G T A C T G T G A C A G T C A G C T A C G T
p-value:1e-9
log p-value:-2.084e+01
Information Content per bp:1.851
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif81.0
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets50.8 +/- 30.0bp
Average Position of motif in Background54.1 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AAGGCAAGCA-
AAGGCAAGTGT
 G T C A C T G A C T A G A C T G A G T C C G T A C G T A C T A G G T A C C G T A A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AAGGCAAGCA-
-TBGCACGCAA
 G T C A C T G A C T A G A C T G A G T C C G T A C G T A C T A G G T A C C G T A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAGGCAAGCA
AAAAGTCAA---
 A C G T A C G T G T C A C T G A C T A G A C T G A G T C C G T A C G T A C T A G G T A C C G T A
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AAGGCAAGCA-
---CCAATCAA
 G T C A C T G A C T A G A C T G A G T C C G T A C G T A C T A G G T A C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAGGCAAGCA----
SCAGYCADGCATGAC
 A C G T G T C A C T G A C T A G A C T G A G T C C G T A C G T A C T A G G T A C C G T A A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AAGGCAAGCA
----CACGCA
 G T C A C T G A C T A G A C T G A G T C C G T A C G T A C T A G G T A C C G T A
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AAGGCAAGCA--
NWTAAYCYAATCAWN
 A C G T A C G T A C G T G T C A C T G A C T A G A C T G A G T C C G T A C G T A C T A G G T A C C G T A A C G T A C G T
C A T G G C A T C G A T C G T A C G T A G A T C A G T C A G C T C G T A C G T A A C G T A G T C C G T A C G T A G C A T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AAGGCAAGCA
WAAGTAAAYA
 G T C A C T G A C T A G A C T G A G T C C G T A C G T A C T A G G T A C C G T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXP3/MA0850.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AAGGCAAGCA
---GTAAACA
 G T C A C T G A C T A G A C T G A G T C C G T A C G T A C T A G G T A C C G T A
A C G T A C G T A C G T C T A G G A C T C G T A C T G A T C G A A G T C C T G A

DUX4/MA0468.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AAGGCAAGCA
TAATTTAATCA
 A C G T G T C A C T G A C T A G A C T G A G T C C G T A C G T A C T A G G T A C C G T A
G C A T C T G A C G T A G A C T A G C T A G C T G T C A C G T A A C G T A G T C C G T A