Information for 22-ACAGCCAGTMAATKAT (Motif 27)

C G T A T G A C C G T A A C T G A G T C A G T C C G T A T A C G C G A T G T C A C G T A C G T A C G A T C A T G T C G A A G C T
Reverse Opposite:
C T G A A G C T G T A C C G T A G C A T A C G T C A G T G C T A A T G C C G A T A C T G A C T G A G T C A C G T A C T G G C A T
p-value:1e-9
log p-value:-2.093e+01
Information Content per bp:1.741
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.7 +/- 26.2bp
Average Position of motif in Background44.3 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ACAGCCAGTMAATKAT
ACTAGCCAATCA-----
 A C G T C G T A T G A C C G T A A C T G A G T C A G T C C G T A T A C G C G A T G T C A C G T A C G T A C G A T C A T G T C G A A G C T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ACAGCCAGTMAATKAT
-CAGCC----------
 C G T A T G A C C G T A A C T G A G T C A G T C C G T A T A C G C G A T G T C A C G T A C G T A C G A T C A T G T C G A A G C T
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ACAGCCAGTMAATKAT
-ATGCCAGACN-----
 C G T A T G A C C G T A A C T G A G T C A G T C C G T A T A C G C G A T G T C A C G T A C G T A C G A T C A T G T C G A A G C T
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACAGCCAGTMAATKAT-
ACGGCCATAAAATTAAT
 C G T A T G A C C G T A A C T G A G T C A G T C C G T A T A C G C G A T G T C A C G T A C G T A C G A T C A T G T C G A A G C T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCCAGTMAATKAT
NNNNTGCCAGTGATTG--
 A C G T A C G T C G T A T G A C C G T A A C T G A G T C A G T C C G T A T A C G C G A T G T C A C G T A C G T A C G A T C A T G T C G A A G C T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:ACAGCCAGTMAATKAT
--TGCCAA--------
 C G T A T G A C C G T A A C T G A G T C A G T C C G T A T A C G C G A T G T C A C G T A C G T A C G A T C A T G T C G A A G C T
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ACAGCCAGTMAATKAT
BCAGACWA--------
 C G T A T G A C C G T A A C T G A G T C A G T C C G T A T A C G C G A T G T C A C G T A C G T A C G A T C A T G T C G A A G C T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ACAGCCAGTMAATKAT
AGAGCCATAAAATTCG
 C G T A T G A C C G T A A C T G A G T C A G T C C G T A T A C G C G A T G T C A C G T A C G T A C G A T C A T G T C G A A G C T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCCAGTMAATKAT
CACAGN-----------
 A C G T C G T A T G A C C G T A A C T G A G T C A G T C C G T A T A C G C G A T G T C A C G T A C G T A C G A T C A T G T C G A A G C T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ACAGCCAGTMAATKAT
CTTAACCACTTAAGGAT
 A C G T C G T A T G A C C G T A A C T G A G T C A G T C C G T A T A C G C G A T G T C A C G T A C G T A C G A T C A T G T C G A A G C T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T