Information for 13-GTYATTYKTMACA (Motif 20)

A C T G A C G T A G T C C G T A A C G T A C G T A G T C A C G T A C G T G T A C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G C G T A G T C A C T A G G T C A C G T A C G A T C T A G C G T A A G T C
p-value:1e-11
log p-value:-2.565e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets76.6 +/- 7.0bp
Average Position of motif in Background76.9 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTYATTYKTMACA
RGCCATYAATCA--
 A C G T A C T G A C G T A G T C C G T A A C G T A C G T A G T C A C G T A C G T G T A C C G T A A G T C C G T A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTYATTYKTMACA
GTCATN-------
 A C T G A C G T A G T C C G T A A C G T A C G T A G T C A C G T A C G T G T A C C G T A A G T C C G T A
T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0108.1_Atf1_2/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTYATTYKTMACA-
NTTATTCGTCATNC
 A C T G A C G T A G T C C G T A A C G T A C G T A G T C A C G T A C G T G T A C C G T A A G T C C G T A A C G T
C A T G G C A T G C A T T C G A G A C T C A G T A G T C T A C G G A C T G A T C T C G A A G C T G A C T A T G C

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTYATTYKTMACA--
-TAATTGTTCTAAAC
 A C T G A C G T A G T C C G T A A C G T A C G T A G T C A C G T A C G T G T A C C G T A A G T C C G T A A C G T A C G T
A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTYATTYKTMACA--
NNAATTAGTCACGGT
 A C T G A C G T A G T C C G T A A C G T A C G T A G T C A C G T A C G T G T A C C G T A A G T C C G T A A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTYATTYKTMACA-------
---NNTTTTCACACCTTNNN
 A C T G A C G T A G T C C G T A A C G T A C G T A G T C A C G T A C G T G T A C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GTYATTYKTMACA--
-ACATTCATGACACG
 A C T G A C G T A G T C C G T A A C G T A C G T A G T C A C G T A C G T G T A C C G T A A G T C C G T A A C G T A C G T
A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:GTYATTYKTMACA----
-------TTMACACCTT
 A C T G A C G T A G T C C G T A A C G T A C G T A G T C A C G T A C G T G T A C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTYATTYKTMACA
GCTATTTTTAGC-
 A C T G A C G T A G T C C G T A A C G T A C G T A G T C A C G T A C G T G T A C C G T A A G T C C G T A
C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GTYATTYKTMACA
NCNTTTGTTATTTNN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A C G T A C G T A G T C A C G T A C G T G T A C C G T A A G T C C G T A
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T A C G T A C G T A C G T A C G T