Information for 13-GCCAAVTTCAAAC (Motif 17)

A T C G A G T C G T A C C G T A C T G A T G A C A C G T A C G T A T G C C G T A G T C A C G T A T A G C
Reverse Opposite:
A T C G A C G T A C G T A C G T A T C G C G T A G T C A A C T G A G C T C G A T A C T G C T A G A T G C
p-value:1e-9
log p-value:-2.166e+01
Information Content per bp:1.758
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif17.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets52.8 +/- 31.2bp
Average Position of motif in Background53.8 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GCCAAVTTCAAAC
--CGGTTTCAAA-
 A T C G A G T C G T A C C G T A C T G A T G A C A C G T A C G T A T G C C G T A G T C A C G T A T A G C
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GCCAAVTTCAAAC
----NATTCAAAT
 A T C G A G T C G T A C C G T A C T G A T G A C A C G T A C G T A T G C C G T A G T C A C G T A T A G C
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GCCAAVTTCAAAC-
----ACATCAAAGG
 A T C G A G T C G T A C C G T A C T G A T G A C A C G T A C G T A T G C C G T A G T C A C G T A T A G C A C G T
A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

TCF7L2/MA0523.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCCAAVTTCAAAC---
--AAAGATCAAAGGAA
 A T C G A G T C G T A C C G T A C T G A T G A C A C G T A C G T A T G C C G T A G T C A C G T A T A G C A C G T A C G T A C G T
A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GCCAAVTTCAAAC-
----ACWTCAAAGG
 A T C G A G T C G T A C C G T A C T G A T G A C A C G T A C G T A T G C C G T A G T C A C G T A T A G C A C G T
A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCCAAVTTCAAAC--
WNAGTCADAVTGAAACTN
 A C G T A C G T A C G T A T C G A G T C G T A C C G T A C T G A T G A C A C G T A C G T A T G C C G T A G T C A C G T A T A G C A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

PB0013.1_Eomes_1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCCAAVTTCAAAC------
--NNTTTTCACACCTTNNN
 A T C G A G T C G T A C C G T A C T G A T G A C A C G T A C G T A T G C C G T A G T C A C G T A T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

TBX21/MA0690.1/Jaspar

Match Rank:8
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:GCCAAVTTCAAAC---
------TTCACACCTT
 A T C G A G T C G T A C C G T A C T G A T G A C A C G T A C G T A T G C C G T A G T C A C G T A T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T

EOMES/MA0800.1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCCAAVTTCAAAC---
---NTTTTCACACCTT
 A T C G A G T C G T A C C G T A C T G A T G A C A C G T A C G T A T G C C G T A G T C A C G T A T A G C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

TBX20/MA0689.1/Jaspar

Match Rank:10
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCCAAVTTCAAAC---
-----CTTCACACCTA
 A T C G A G T C G T A C C G T A C T G A T G A C A C G T A C G T A T G C C G T A G T C A C G T A T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A