Information for 16-CTRATCYAMATRY (Motif 22)

A G T C A C G T C T A G C G T A A C G T A G T C A G T C C G T A T G A C G T C A A C G T T C A G G A C T
Reverse Opposite:
C T G A A G T C C G T A A C G T A C T G A C G T C T A G A C T G C G T A A C G T A G T C C G T A A C T G
p-value:1e-10
log p-value:-2.499e+01
Information Content per bp:1.840
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets31.5 +/- 17.1bp
Average Position of motif in Background65.1 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTRATCYAMATRY
GCTAATCC------
 A C G T A G T C A C G T C T A G C G T A A C G T A G T C A G T C C G T A T G A C G T C A A C G T T C A G G A C T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTRATCYAMATRY
ATAATCCC-----
 A G T C A C G T C T A G C G T A A C G T A G T C A G T C C G T A T G A C G T C A A C G T T C A G G A C T
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTRATCYAMATRY
NNTAATCCNGNCNN
 A C G T A G T C A C G T C T A G C G T A A C G T A G T C A G T C C G T A T G A C G T C A A C G T T C A G G A C T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

Crx/MA0467.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTRATCYAMATRY
CTAATCCTCTT--
 A G T C A C G T C T A G C G T A A C G T A G T C A G T C C G T A T G A C G T C A A C G T T C A G G A C T
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTRATCYAMATRY
SSAATCCACANN-
 A G T C A C G T C T A G C G T A A C G T A G T C A G T C C G T A T G A C G T C A A C G T T C A G G A C T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C A C G T

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTRATCYAMATRY
GCTAATCCCC----
 A C G T A G T C A C G T C T A G C G T A A C G T A G T C A G T C C G T A T G A C G T C A A C G T T C A G G A C T
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTRATCYAMATRY
CCTAATCCGC----
 A C G T A G T C A C G T C T A G C G T A A C G T A G T C A G T C C G T A T G A C G T C A A C G T T C A G G A C T
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTRATCYAMATRY
TCCAATCCACA---
 A C G T A G T C A C G T C T A G C G T A A C G T A G T C A G T C C G T A T G A C G T C A A C G T T C A G G A C T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTRATCYAMATRY-
TTGACCTANTTATN
 A G T C A C G T C T A G C G T A A C G T A G T C A G T C C G T A T G A C G T C A A C G T T C A G G A C T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTRATCYAMATRY
YTAATCCY-----
 A G T C A C G T C T A G C G T A A C G T A G T C A G T C C G T A T G A C G T C A A C G T T C A G G A C T
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T