Information for 10-TGTCTAATCA (Motif 28)

A C G T A C T G G C A T A G T C A C G T C T G A C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T C T A G C G T A A C G T A G C T C G T A A C T G C G T A A G T C C G T A
p-value:1e-10
log p-value:-2.340e+01
Information Content per bp:1.918
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif50.4
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets44.5 +/- 24.1bp
Average Position of motif in Background46.8 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx8/MA0705.1/Jaspar

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:TGTCTAATCA-
---CTAATTAG
 A C G T A C T G G C A T A G T C A C G T C T G A C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A G T C A G C T T C G A C G T A A C G T A G C T C T G A T C A G

EVX2/MA0888.1/Jaspar

Match Rank:2
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TGTCTAATCA--
--NNTAATTANN
 A C G T A C T G G C A T A G T C A C G T C T G A C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TGTCTAATCA-
ACCGTGACTAATTNN
 A C G T A C G T A C G T A C G T A C G T A C T G G C A T A G T C A C G T C T G A C G T A A C G T A G T C C G T A A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

EVX1/MA0887.1/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TGTCTAATCA--
--GNTAATTANN
 A C G T A C T G G C A T A G T C A C G T C T G A C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C

VSX2/MA0726.1/Jaspar

Match Rank:5
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TGTCTAATCA-
---CTAATTAG
 A C G T A C T G G C A T A G T C A C G T C T G A C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

VAX2/MA0723.1/Jaspar

Match Rank:6
Score:0.69
Offset:3
Orientation:forward strand
Alignment:TGTCTAATCA-
---CTAATTAC
 A C G T A C T G G C A T A G T C A C G T C T G A C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A G T C G A C T G T C A G C T A C G A T C A G T C T G A A G T C

VSX1/MA0725.1/Jaspar

Match Rank:7
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TGTCTAATCA-
---CTAATTAT
 A C G T A C T G G C A T A G T C A C G T C T G A C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

VAX1/MA0722.1/Jaspar

Match Rank:8
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TGTCTAATCA-
---CTAATTAC
 A C G T A C T G G C A T A G T C A C G T C T G A C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A G T C G A C T G T C A G T C A C G A T C A G T C T G A G A T C

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:9
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TGTCTAATCA
--NCTAATTA
 A C G T A C T G G C A T A G T C A C G T C T G A C G T A A C G T A G T C C G T A
A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A

LHX6/MA0658.1/Jaspar

Match Rank:10
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TGTCTAATCA--
--ACTAATTAGC
 A C G T A C T G G C A T A G T C A C G T C T G A C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A C G T T C G A A G T C A G C T T C G A G T C A A G C T A G C T C T G A T C A G A G T C