Information for 11-GTTTTCTTTGTCTGAT (Motif 11)

C T A G C G A T A C G T A G C T C G A T A T G C C G A T A G C T C G A T T C A G A C G T A G T C A C G T A C T G T C G A A C G T
Reverse Opposite:
C G T A A C G T G T A C C G T A T A C G C G T A A G T C C G T A C T G A C G T A A T C G C G T A C T G A C G T A C G T A A G T C
p-value:1e-13
log p-value:-3.086e+01
Information Content per bp:1.760
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.0 +/- 25.4bp
Average Position of motif in Background47.3 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTTTTCTTTGTCTGAT-
-ANTCCTTTGTCTNNNN
 C T A G C G A T A C G T A G C T C G A T A T G C C G A T A G C T C G A T T C A G A C G T A G T C A C G T A C T G T C G A A C G T A C G T
A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.55
Offset:7
Orientation:forward strand
Alignment:GTTTTCTTTGTCTGAT
-------TWGTCTGV-
 C T A G C G A T A C G T A G C T C G A T A T G C C G A T A G C T C G A T T C A G A C G T A G T C A C G T A C T G T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GTTTTCTTTGTCTGAT
-------CTGTCTGG-
 C T A G C G A T A C G T A G C T C G A T A T G C C G A T A G C T C G A T T C A G A C G T A G T C A C G T A C T G T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

IRF1/MA0050.2/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GTTTTCTTTGTCTGAT-
TTTTACTTTCACTTTCACTTT
 A C G T A C G T A C G T A C G T C T A G C G A T A C G T A G C T C G A T A T G C C G A T A G C T C G A T T C A G A C G T A G T C A C G T A C T G T C G A A C G T A C G T
G A C T A G C T A G C T A G C T C T G A A T G C C G A T A G C T A G C T A G T C C T G A A T G C G C A T G A C T G A C T A G T C C G T A A G T C G A C T G C A T G A C T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GTTTTCTTTGTCTGAT
ACTTTCACTTTC----
 C T A G C G A T A C G T A G C T C G A T A T G C C G A T A G C T C G A T T C A G A C G T A G T C A C G T A C T G T C G A A C G T
C T G A A T G C G A C T C G A T A G C T A G T C C G T A A T G C A C G T A C G T G A C T A G T C A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GTTTTCTTTGTCTGAT
----CCWTTGTYYB--
 C T A G C G A T A C G T A G C T C G A T A T G C C G A T A G C T C G A T T C A G A C G T A G T C A C G T A C T G T C G A A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GTTTTCTTTGTCTGAT
-----CTTTGT-----
 C T A G C G A T A C G T A G C T C G A T A T G C C G A T A G C T C G A T T C A G A C G T A G T C A C G T A C T G T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GTTTTCTTTGTCTGAT
AGTTTCAGTTTC----
 C T A G C G A T A C G T A G C T C G A T A T G C C G A T A G C T C G A T T C A G A C G T A G T C A C G T A C T G T C G A A C G T
C T G A A T C G A G C T A G C T A C G T T A G C C T G A T A C G C G A T A C G T G A C T A G T C A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GTTTTCTTTGTCTGAT
-----VBSYGTCTGG-
 C T A G C G A T A C G T A G C T C G A T A T G C C G A T A G C T C G A T T C A G A C G T A G T C A C G T A C T G T C G A A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GTTTTCTTTGTCTGAT---
----CCATTGTATGCAAAT
 C T A G C G A T A C G T A G C T C G A T A T G C C G A T A G C T C G A T T C A G A C G T A G T C A C G T A C T G T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T