Information for 5-TGTAGCTCTTAARTTT (Motif 9)

A C G T A C T G C A G T T G C A T C A G A G T C A C G T A T G C C A G T C G A T G C T A C T G A C T G A A C G T A C G T A C G T
Reverse Opposite:
C G T A T C G A C G T A A G C T A G C T C G A T C G T A G C T A A T C G G T C A A C T G A G T C A C G T G T C A A G T C C G T A
p-value:1e-11
log p-value:-2.728e+01
Information Content per bp:1.732
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif13.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets64.1 +/- 25.5bp
Average Position of motif in Background54.0 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGTAGCTCTTAARTTT-
-AAAGCTCGTAAAATTT
 A C G T A C T G C A G T T G C A T C A G A G T C A C G T A T G C C A G T C G A T G C T A C T G A C T G A A C G T A C G T A C G T A C G T
A C G T G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TGTAGCTCTTAARTTT-
-AAACCTCGTAAAATTT
 A C G T A C T G C A G T T G C A T C A G A G T C A C G T A T G C C A G T C G A T G C T A C T G A C T G A A C G T A C G T A C G T A C G T
A C G T G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:3
Score:0.50
Offset:4
Orientation:forward strand
Alignment:TGTAGCTCTTAARTTT
----GCTCGTAAAAA-
 A C G T A C T G C A G T T G C A T C A G A G T C A C G T A T G C C A G T C G A T G C T A C T G A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:TGTAGCTCTTAARTTT
---NGCTN--------
 A C G T A C T G C A G T T G C A T C A G A G T C A C G T A T G C C A G T C G A T G C T A C T G A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.47
Offset:4
Orientation:forward strand
Alignment:TGTAGCTCTTAARTTT
----GGTCGTAAAATT
 A C G T A C T G C A G T T G C A T C A G A G T C A C G T A T G C C A G T C G A T G C T A C T G A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

SCRT1/MA0743.1/Jaspar

Match Rank:6
Score:0.47
Offset:-7
Orientation:reverse strand
Alignment:-------TGTAGCTCTTAARTTT
ANCCACCTGTTGCNC--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A G T T G C A T C A G A G T C A C G T A T G C C A G T C G A T G C T A C T G A C T G A A C G T A C G T A C G T
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:7
Score:0.46
Offset:-1
Orientation:forward strand
Alignment:-TGTAGCTCTTAARTTT
AGGACGCTGTAAAGGGA
 A C G T A C G T A C T G C A G T T G C A T C A G A G T C A C G T A T G C C A G T C G A T G C T A C T G A C T G A A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.46
Offset:3
Orientation:reverse strand
Alignment:TGTAGCTCTTAARTTT
---NSCACTYVAV---
 A C G T A C T G C A G T T G C A T C A G A G T C A C G T A T G C C A G T C G A T G C T A C T G A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:9
Score:0.46
Offset:-5
Orientation:reverse strand
Alignment:-----TGTAGCTCTTAARTTT
CCACCTGTTGCAT--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A G T T G C A T C A G A G T C A C G T A T G C C A G T C G A T G C T A C T G A C T G A A C G T A C G T A C G T
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:10
Score:0.46
Offset:-1
Orientation:forward strand
Alignment:-TGTAGCTCTTAARTTT
AAGACGCTGTAAAGCGA
 A C G T A C G T A C T G C A G T T G C A T C A G A G T C A C G T A T G C C A G T C G A T G C T A C T G A C T G A A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A