Information for 3-TGTMMMMAAGYCCMAG (Motif 4)

A C G T A C T G A C G T G T A C G T C A G T C A G T A C C G T A G T C A A C T G A G T C A G T C G T A C G T A C C G T A A C T G
Reverse Opposite:
A G T C C G A T C A T G A C T G A C T G C T A G A G T C A C G T A C G T A C T G A C G T A C G T A C T G C G T A A G T C C G T A
p-value:1e-16
log p-value:-3.760e+01
Information Content per bp:1.844
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.5 +/- 19.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0158.1_Rfx3_2/Jaspar

Match Rank:1
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------TGTMMMMAAGYCCMAG-
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T A C G T C A G T C A G T A C C G T A G T C A A C T G A G T C A G T C G T A C G T A C C G T A A C T G A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TGTMMMMAAGYCCMAG--
--GGCAAAAGTCCAATAA
 A C G T A C T G A C G T G T A C G T C A G T C A G T A C C G T A G T C A A C T G A G T C A G T C G T A C G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGTMMMMAAGYCCMAG
TATGTAAACANG------
 A C G T A C G T A C G T A C T G A C G T G T A C G T C A G T C A G T A C C G T A G T C A A C T G A G T C A G T C G T A C G T A C C G T A A C T G
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGTMMMMAAGYCCMAG
ATGTAAACADGS-----
 A C G T A C G T A C T G A C G T G T A C G T C A G T C A G T A C C G T A G T C A A C T G A G T C A G T C G T A C G T A C C G T A A C T G
C G T A C A G T T C A G C G A T G T C A G T C A C G T A A G T C C G T A C G A T A T C G A T G C A C G T A C G T A C G T A C G T A C G T

FOXO3/MA0157.2/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TGTMMMMAAGYCCMAG
-GTAAACAA-------
 A C G T A C T G A C G T G T A C G T C A G T C A G T A C C G T A G T C A A C T G A G T C A G T C G T A C G T A C C G T A A C T G
A C G T C T A G A C G T T G C A G T C A G T C A G T A C G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxk1/MA0852.1/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TGTMMMMAAGYCCMAG
AAAATGTAAACAAACAG---
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T A C G T C A G T C A G T A C C G T A G T C A A C T G A G T C A G T C G T A C G T A C C G T A A C T G
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G A C G T A C G T A C G T

PB0018.1_Foxk1_1/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TGTMMMMAAGYCCMAG
AAAATGTAAACAAACAG---
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T A C G T C A G T C A G T A C C G T A G T C A A C T G A G T C A G T C G T A C G T A C C G T A A C T G
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G A C G T A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:8
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----TGTMMMMAAGYCCMAG
NCWRWGTAAACANSV-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T A C G T C A G T C A G T A C C G T A G T C A A C T G A G T C A G T C G T A C G T A C C G T A A C T G
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G A C G T A C G T A C G T A C G T A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TGTMMMMAAGYCCMAG
WWTRTAAACAVG------
 A C G T A C G T A C G T A C T G A C G T G T A C G T C A G T C A G T A C C G T A G T C A A C T G A G T C A G T C G T A C G T A C C G T A A C T G
C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Foxo1/MA0480.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGTMMMMAAGYCCMAG
TGTAAACAGGA-----
 A C G T A C T G A C G T G T A C G T C A G T C A G T A C C G T A G T C A A C T G A G T C A G T C G T A C G T A C C G T A A C T G
C G A T C T A G C G A T G T C A C G T A C G T A A G T C C G T A T C A G T A C G G T C A A C G T A C G T A C G T A C G T A C G T