Information for 5-GCATACGAGA (Motif 3)

C T A G A T G C G T C A A G C T C G T A A G T C C T A G C G T A A C T G C G T A
Reverse Opposite:
G A C T A G T C A C G T A G T C A C T G A C G T C T G A A C G T A T C G A G T C
p-value:1e-18
log p-value:-4.342e+01
Information Content per bp:1.883
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.74%
Number of Background Sequences with motif13.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.5 +/- 25.0bp
Average Position of motif in Background49.8 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0106.1_Arid5a_2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCATACGAGA---
CATACAATACGAAATAA
 A C G T A C G T A C G T A C G T C T A G A T G C G T C A A G C T C G T A A G T C C T A G C G T A A C T G C G T A A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

PB0138.1_Irf4_2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCATACGAGA-----
GNNACCGAGAATNNN
 C T A G A T G C G T C A A G C T C G T A A G T C C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCATACGAGA
GGGTACGTGC
 C T A G A T G C G T C A A G C T C G T A A G T C C T A G C G T A A C T G C G T A
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCATACGAGA-
ATTTGCATACAATGG
 A C G T A C G T A C G T A C G T C T A G A T G C G T C A A G C T C G T A A G T C C T A G C G T A A C T G C G T A A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0044.1_Mtf1_1/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GCATACGAGA-
NNTTTGCACACGGCCC
 A C G T A C G T A C G T A C G T A C G T C T A G A T G C G T C A A G C T C G T A A G T C C T A G C G T A A C T G C G T A A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCATACGAGA--
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T C T A G A T G C G T C A A G C T C G T A A G T C C T A G C G T A A C T G C G T A A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCATACGAGA-----
TTGACCGAGAATTCC
 C T A G A T G C G T C A A G C T C G T A A G T C C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PB0032.1_IRC900814_1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCATACGAGA------
ATTTACGACAAATAGC
 C T A G A T G C G T C A A G C T C G T A A G T C C T A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCATACGAGA
--RTACGTGC
 C T A G A T G C G T C A A G C T C G T A A G T C C T A G C G T A A C T G C G T A
A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GCATACGAGA---
ANATTTTACGAGNNNN
 A C G T A C G T A C G T C T A G A T G C G T C A A G C T C G T A A G T C C T A G C G T A A C T G C G T A A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T