Information for 9-CTCTCGTGTTACT (Motif 20)

A G T C A G C T A G T C A G C T A G T C A C T G A C G T A C T G A C G T A C G T C G T A A T G C A C G T
Reverse Opposite:
C G T A A T C G A C G T C G T A C G T A A G T C C G T A A G T C C T A G C T G A A C T G C T G A A C T G
p-value:1e-8
log p-value:-1.979e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.2 +/- 23.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CTCTCGTGTTACT--
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T A C G T A G T C A G C T A G T C A G C T A G T C A C T G A C G T A C T G A C G T A C G T C G T A A T G C A C G T A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

TFEC/MA0871.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTCTCGTGTTACT
NTCACGTGAT---
 A G T C A G C T A G T C A G C T A G T C A C T G A C G T A C T G A C G T A C G T C G T A A T G C A C G T
T C A G A C G T A G T C C G T A A G T C T C A G C G A T A C T G G T C A A G C T A C G T A C G T A C G T

ZBTB33/MA0527.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTCTCGTGTTACT--
CTCTCGCGAGATCTG
 A G T C A G C T A G T C A G C T A G T C A C T G A C G T A C T G A C G T A C G T C G T A A T G C A C G T A C G T A C G T
A G T C A G C T T G A C G A C T A G T C C T A G G A T C A C T G T C G A A C T G T C G A A G C T A G T C A G C T A T C G

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTCTCGTGTTACT
GKMTCADRTTWC-
 A G T C A G C T A G T C A G C T A G T C A C T G A C G T A C T G A C G T A C G T C G T A A T G C A C G T
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTCTCGTGTTACT---
-NCNTTTGTTATTTNN
 A G T C A G C T A G T C A G C T A G T C A C T G A C G T A C T G A C G T A C G T C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

Mlxip/MA0622.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTCTCGTGTTACT
-GCACGTGT----
 A G T C A G C T A G T C A G C T A G T C A C T G A C G T A C T G A C G T A C G T C G T A A T G C A C G T
A C G T A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T A C G T A C G T A C G T A C G T

TFE3/MA0831.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTCTCGTGTTACT
GTCACGTGNT---
 A G T C A G C T A G T C A G C T A G T C A C T G A C G T A C T G A C G T A C G T C G T A A T G C A C G T
C T A G A C G T T G A C C G T A A G T C T C A G C G A T A T C G T C G A A G C T A C G T A C G T A C G T

Id2/MA0617.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTCTCGTGTTACT
-TCACGTGC----
 A G T C A G C T A G T C A G C T A G T C A C T G A C G T A C T G A C G T A C G T C G T A A T G C A C G T
A C G T G A C T A G T C C G T A A G T C A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTCTCGTGTTACT
GKVTCADRTTWC-
 A G T C A G C T A G T C A G C T A G T C A C T G A C G T A C T G A C G T A C G T C G T A A T G C A C G T
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

Mitf/MA0620.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTCTCGTGTTACT
-NCACGTGACN--
 A G T C A G C T A G T C A G C T A G T C A C T G A C G T A C T G A C G T A C G T C G T A A T G C A C G T
A C G T A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C A C G T A C G T