Information for 7-KAGKTRWGGGGWAWSC (Motif 8)

A C T G C T G A A C T G A C T G A C G T C T G A C G A T A C T G A C T G A C T G A C T G C G T A C G T A C G T A A T G C A T G C
Reverse Opposite:
A T C G A T C G G C A T A C G T C G A T A G T C A G T C A G T C A G T C G C T A A G C T C G T A G T A C A G T C A G C T G T A C
p-value:1e-11
log p-value:-2.546e+01
Information Content per bp:1.814
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.6 +/- 20.0bp
Average Position of motif in Background71.1 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.61
Offset:6
Orientation:forward strand
Alignment:KAGKTRWGGGGWAWSC--
------GGGGGAATCCCC
 A C T G C T G A A C T G A C T G A C G T C T G A C G A T A C T G A C T G A C T G A C T G C G T A C G T A C G T A A T G C A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB2/MA0778.1/Jaspar

Match Rank:2
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:KAGKTRWGGGGWAWSC---
------AGGGGAATCCCCT
 A C T G C T G A A C T G A C T G A C G T C T G A C G A T A C T G A C T G A C T G A C T G C G T A C G T A C G T A A T G C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:KAGKTRWGGGGWAWSC
---GGAGGGGGAA---
 A C T G C T G A A C T G A C T G A C G T C T G A C G A T A C T G A C T G A C T G A C T G C G T A C G T A C G T A A T G C A T G C
A C G T A C G T A C G T A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T A C G T A C G T

PB0156.1_Plagl1_2/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:KAGKTRWGGGGWAWSC---
--GCTGGGGGGTACCCCTT
 A C T G C T G A A C T G A C T G A C G T C T G A C G A T A C T G A C T G A C T G A C T G C G T A C G T A C G T A A T G C A T G C A C G T A C G T A C G T
A C G T A C G T C T A G A G T C G C A T C T A G C A T G A C T G C T A G A C T G A C T G A C G T C T G A G A T C G T A C G T A C G A T C G A C T C G A T

MZF1/MA0056.1/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:KAGKTRWGGGGWAWSC
------TGGGGA----
 A C T G C T G A A C T G A C T G A C G T C T G A C G A T A C T G A C T G A C T G A C T G C G T A C G T A C G T A A T G C A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:6
Score:0.59
Offset:6
Orientation:forward strand
Alignment:KAGKTRWGGGGWAWSC---
------AGGGGAATCCCCT
 A C T G C T G A A C T G A C T G A C G T C T G A C G A T A C T G A C T G A C T G A C T G C G T A C G T A C G T A A T G C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

SPIB/MA0081.1/Jaspar

Match Rank:7
Score:0.55
Offset:6
Orientation:forward strand
Alignment:KAGKTRWGGGGWAWSC
------AGAGGAA---
 A C T G C T G A A C T G A C T G A C G T C T G A C G A T A C T G A C T G A C T G A C T G C G T A C G T A C G T A A T G C A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:KAGKTRWGGGGWAWSC
-AGGTCAAGGTCA---
 A C T G C T G A A C T G A C T G A C G T C T G A C G A T A C T G A C T G A C T G A C T G C G T A C G T A C G T A A T G C A T G C
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:KAGKTRWGGGGWAWSC
CAGGTAAGTAT-----
 A C T G C T G A A C T G A C T G A C G T C T G A C G A T A C T G A C T G A C T G A C T G C G T A C G T A C G T A A T G C A T G C
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:KAGKTRWGGGGWAWSC
CAGGTGAGG-------
 A C T G C T G A A C T G A C T G A C G T C T G A C G A T A C T G A C T G A C T G A C T G C G T A C G T A C G T A A T G C A T G C
A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T