Information for 19-CTGRCCMTYRCAT (Motif 29)

A T G C A C G T A C T G C T G A A T G C A G T C G T A C A C G T A G T C C T A G A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T C T A G A G T C T C A G C G T A A C T G A C T G A T C G A G C T A G T C C G T A A T C G
p-value:1e-7
log p-value:-1.696e+01
Information Content per bp:1.856
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.2 +/- 26.3bp
Average Position of motif in Background37.4 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTGRCCMTYRCAT
CTGACCTTTG---
 A T G C A C G T A C T G C T G A A T G C A G T C G T A C A C G T A G T C C T A G A G T C C G T A A C G T
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTGRCCMTYRCAT
-TGACCTTTNCNT
 A T G C A C G T A C T G C T G A A T G C A G T C G T A C A C G T A G T C C T A G A G T C C G T A A C G T
A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGRCCMTYRCAT-----
-TGACCTTTGCATGACCT
 A T G C A C G T A C T G C T G A A T G C A G T C G T A C A C G T A G T C C T A G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T T A C G T G C A T G A C G T A C A G C T A G C T G C A T T C A G T A G C C T G A A C G T C T A G T G C A T G A C G T A C A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTGRCCMTYRCAT
-TGACCT------
 A T G C A C G T A C T G C T G A A T G C A G T C G T A C A C G T A G T C C T A G A G T C C G T A A C G T
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGRCCMTYRCAT
-TGACCYCT----
 A T G C A C G T A C T G C T G A A T G C A G T C G T A C A C G T A G T C C T A G A G T C C G T A A C G T
A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CTGRCCMTYRCAT
CNNTTGACCTTTG---
 A C G T A C G T A C G T A T G C A C G T A C T G C T G A A T G C A G T C G T A C A C G T A G T C C T A G A G T C C G T A A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTGRCCMTYRCAT-
GCTGACCTTGAACTN
 A C G T A T G C A C G T A C T G C T G A A T G C A G T C G T A C A C G T A G T C C T A G A G T C C G T A A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGRCCMTYRCAT
NTGACCTTGA---
 A T G C A C G T A C T G C T G A A T G C A G T C G T A C A C G T A G T C C T A G A G T C C G T A A C G T
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTGRCCMTYRCAT
NNNNTGACCTTTNNNN
 A C G T A C G T A C G T A T G C A C G T A C T G C T G A A T G C A G T C G T A C A C G T A G T C C T A G A G T C C G T A A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

PB0098.1_Zfp410_1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTGRCCMTYRCAT----
NNNTCCATCCCATAANN
 A T G C A C G T A C T G C T G A A T G C A G T C G T A C A C G T A G T C C T A G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A