Information for 12-CCTGCCAGGC (Motif 17)

A G T C G A T C G C A T A C T G G T A C G A T C G C T A A C T G A C T G A T G C
Reverse Opposite:
A T C G G T A C A G T C C G A T C T A G C A T G A G T C C G T A C T A G A C T G
p-value:1e-6
log p-value:-1.418e+01
Information Content per bp:1.825
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.58%
Number of Background Sequences with motif319.7
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets52.8 +/- 24.0bp
Average Position of motif in Background48.4 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCTGCCAGGC
-TTGCCAAG-
 A G T C G A T C G C A T A C T G G T A C G A T C G C T A A C T G A C T G A T G C
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCTGCCAGGC
VBTGWCAGCB
 A G T C G A T C G C A T A C T G G T A C G A T C G C T A A C T G A C T G A T G C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCTGCCAGGC-
-ATGCCAGACN
 A G T C G A T C G C A T A C T G G T A C G A T C G C T A A C T G A C T G A T G C A C G T
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTGCCAGGC
CGTGCCAAG-
 A G T C G A T C G C A T A C T G G T A C G A T C G C T A A C T G A C T G A T G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCTGCCAGGC
-TTGACAGC-
 A G T C G A T C G C A T A C T G G T A C G A T C G C T A A C T G A C T G A T G C
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCTGCCAGGC---
TCCCAGMCRAGCCCC
 A C G T A C G T A G T C G A T C G C A T A C T G G T A C G A T C G C T A A C T G A C T G A T G C A C G T A C G T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCTGCCAGGC
--TGCCAA--
 A G T C G A T C G C A T A C T G G T A C G A T C G C T A A C T G A C T G A T G C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCTGCCAGGC--
SCTGTCAVTCAV
 A G T C G A T C G C A T A C T G G T A C G A T C G C T A A C T G A C T G A T G C A C G T A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CCTGCCAGGC--
----CTAGGCCT
 A G T C G A T C G C A T A C T G G T A C G A T C G C T A A C T G A C T G A T G C A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCTGCCAGGC-
GSCTGTCACTCA
 A C G T A G T C G A T C G C A T A C T G G T A C G A T C G C T A A C T G A C T G A T G C A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A