Information for 4-AGCCATTCTGAGTGCC (Motif 13)

C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C A C G T A C T G C G T A A C T G A G C T T A C G A G T C A G T C
Reverse Opposite:
A C T G T A C G A T G C C T G A A G T C A C G T A G T C C G T A A C T G C G T A C G T A A C G T A C T G A C T G G T A C C G A T
p-value:1e-8
log p-value:-1.960e+01
Information Content per bp:1.917
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.2 +/- 21.9bp
Average Position of motif in Background45.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGCCATTCTGAGTGCC
GCNGCCATCTTG------
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C A C G T A C T G C G T A A C T G A G C T T A C G A G T C A G T C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:AGCCATTCTGAGTGCC-
------CTTGAGTGGCT
 C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C A C G T A C T G C G T A A C T G A G C T T A C G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGCCATTCTGAGTGCC
---CCTGCTGAGH---
 C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C A C G T A C T G C G T A A C T G A G C T T A C G A G T C A G T C
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:AGCCATTCTGAGTGCC-
-------TTAAGTGCTT
 C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C A C G T A C T G C G T A A C T G A G C T T A C G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGCCATTCTGAGTGCC
TCNCCTGCTGNGNNN-
 C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C A C G T A C T G C G T A A C T G A G C T T A C G A G T C A G T C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.54
Offset:7
Orientation:forward strand
Alignment:AGCCATTCTGAGTGCC-
-------TTRAGTGSYK
 C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C A C G T A C T G C G T A A C T G A G C T T A C G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:AGCCATTCTGAGTGCC-
-------TTGAGTGSTT
 C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C A C G T A C T G C G T A A C T G A G C T T A C G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGCCATTCTGAGTGCC
TNTCCTGCTGTGNNG-
 C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C A C G T A C T G C G T A A C T G A G C T T A C G A G T C A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:AGCCATTCTGAGTGCC---
-------BTGABTGACAGS
 C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C A C G T A C T G C G T A A C T G A G C T T A C G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGCCATTCTGAGTGCC
NNTCCTGCTGTGNNN-
 C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C A C G T A C T G C G T A A C T G A G C T T A C G A G T C A G T C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T