Information for 2-GCCTAATTCAGTC (Motif 7)

C T A G A G T C A G T C A C G T C G T A C T G A C G A T A C G T A G T C C G T A A C T G A C G T A T G C
Reverse Opposite:
A T C G C G T A A G T C A C G T A C T G C G T A C G T A A G C T C G A T C G T A A C T G A C T G A G T C
p-value:1e-11
log p-value:-2.697e+01
Information Content per bp:1.932
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.6 +/- 29.7bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCCTAATTCAGTC
ATGCATAATTCA---
 A C G T A C G T C T A G A G T C A G T C A C G T C G T A C T G A C G A T A C G T A G T C C G T A A C T G A C G T A T G C
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCCTAATTCAGTC
TATCATAATTAAGGA
 A C G T A C G T C T A G A G T C A G T C A C G T C G T A C T G A C G A T A C G T A G T C C G T A A C T G A C G T A T G C
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

PH0133.1_Pax7/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCCTAATTCAGTC-
NNNTNCTAATTAGNTCN
 A C G T A C G T A C G T C T A G A G T C A G T C A C G T C G T A C T G A C G A T A C G T A G T C C G T A A C T G A C G T A T G C A C G T
G A C T G T C A A C T G C G A T T G C A G A T C G A C T T C G A C G T A G C A T A G C T C T G A C T A G A C G T C G A T A T G C C A T G

mix-a/MA0621.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCCTAATTCAGTC
-NCTAATTAANN-
 C T A G A G T C A G T C A C G T C G T A C T G A C G A T A C G T A G T C C G T A A C T G A C G T A T G C
A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T A C G T

PH0147.1_Pou3f2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCCTAATTCAGTC--
NNNACTAATTAATTANC
 A C G T A C G T C T A G A G T C A G T C A C G T C G T A C T G A C G A T A C G T A G T C C G T A A C T G A C G T A T G C A C G T A C G T
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C

PAX4/MA0068.2/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCCTAATTCAGTC
--CTAATTAG---
 C T A G A G T C A G T C A C G T C G T A C T G A C G A T A C G T A G T C C G T A A C T G A C G T A T G C
A C G T A C G T A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G A C G T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCCTAATTCAGTC
--CTAATTAA---
 C T A G A G T C A G T C A C G T C G T A C T G A C G A T A C G T A G T C C G T A A C T G A C G T A T G C
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T A C G T

PH0132.1_Pax6/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCTAATTCAGTC--
TGATTAATTAATTGAC
 A C G T C T A G A G T C A G T C A C G T C G T A C T G A C G A T A C G T A G T C C G T A A C T G A C G T A T G C A C G T A C G T
A G C T C T A G T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T A C G T T A C G C G T A G T A C

PH0175.1_Vax2/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCCTAATTCAGTC
GTGCACTAATTAAGAC
 A C G T A C G T A C G T C T A G A G T C A G T C A C G T C G T A C T G A C G A T A C G T A G T C C G T A A C T G A C G T A T G C
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C

LHX2/MA0700.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCTAATTCAGTC
-ACTAATTAAC--
 C T A G A G T C A G T C A C G T C G T A C T G A C G A T A C G T A G T C C G T A A C T G A C G T A T G C
A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T A C G T