Information for 12-TCAGRGRAWGGGCMAA (Motif 27)

A C G T A G T C C G T A A T C G C T G A A C T G C T A G C G T A C G T A A C T G A C T G A C T G A G T C G T A C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A C T G A G T C A G T C A G T C C G A T A C G T A G T C A G T C A G C T A T G C A C G T A C T G C G T A
p-value:1e-6
log p-value:-1.510e+01
Information Content per bp:1.887
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.2 +/- 14.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TCAGRGRAWGGGCMAA
--TGGGGAAGGGCM--
 A C G T A G T C C G T A A T C G C T G A A C T G C T A G C G T A C G T A A C T G A C T G A C T G A G T C G T A C C G T A C T G A
A C G T A C G T G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TCAGRGRAWGGGCMAA
--GGAGAAAGGTGCGA
 A C G T A G T C C G T A A T C G C T G A A C T G C T A G C G T A C G T A A C T G A C T G A C T G A G T C G T A C C G T A C T G A
A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TCAGRGRAWGGGCMAA
--AGAGGAAGTG----
 A C G T A G T C C G T A A T C G C T G A A C T G C T A G C G T A C G T A A C T G A C T G A C T G A G T C G T A C C G T A C T G A
A C G T A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TCAGRGRAWGGGCMAA
-TAGGGCAAAGGTCA-
 A C G T A G T C C G T A A T C G C T G A A C T G C T A G C G T A C G T A A C T G A C T G A C T G A G T C G T A C C G T A C T G A
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TCAGRGRAWGGGCMAA
AGGTCACGGAGAGGTCA--
 A C G T A C G T A C G T A C G T A G T C C G T A A T C G C T G A A C T G C T A G C G T A C G T A A C T G A C T G A C T G A G T C G T A C C G T A C T G A
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TCAGRGRAWGGGCMAA
RGGTCADNNAGAGGTCAV-
 A C G T A C G T A C G T A C G T A G T C C G T A A T C G C T G A A C T G C T A G C G T A C G T A A C T G A C T G A C T G A G T C G T A C C G T A C T G A
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C A C G T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---TCAGRGRAWGGGCMAA
AGGTCATGCAAAGGTCA--
 A C G T A C G T A C G T A C G T A G T C C G T A A T C G C T G A A C T G C T A G C G T A C G T A A C T G A C T G A C T G A G T C G T A C C G T A C T G A
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TCAGRGRAWGGGCMAA
--GGGGGCGGGGC---
 A C G T A G T C C G T A A T C G C T G A A C T G C T A G C G T A C G T A A C T G A C T G A C T G A G T C G T A C C G T A C T G A
A C G T A C G T T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C A C G T A C G T A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TCAGRGRAWGGGCMAA
AGGTCAACTAAAGGTCA--
 A C G T A C G T A C G T A C G T A G T C C G T A A T C G C T G A A C T G C T A G C G T A C G T A A C T G A C T G A C T G A G T C G T A C C G T A C T G A
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:10
Score:0.50
Offset:5
Orientation:forward strand
Alignment:TCAGRGRAWGGGCMAA
-----GGAGGGGGAA-
 A C G T A G T C C G T A A T C G C T G A A C T G C T A G C G T A C G T A A C T G A C T G A C T G A G T C G T A C C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T