Information for 8-AWTWGCCATTCAT (Motif 25)

C G T A C G A T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C G C T A A C G T
Reverse Opposite:
C G T A C A G T A C T G G T C A C G T A A C G T A C T G A C T G G T A C C G A T C G T A C G T A A C G T
p-value:1e-6
log p-value:-1.554e+01
Information Content per bp:1.915
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif10.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets34.8 +/- 27.5bp
Average Position of motif in Background38.1 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AWTWGCCATTCAT
ACTAGCCAATCA-
 C G T A C G A T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C G C T A A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.68
Offset:5
Orientation:forward strand
Alignment:AWTWGCCATTCAT------
-----ACATTCATGACACG
 C G T A C G A T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AWTWGCCATTCAT-----
-GACCACATTCATACAAT
 C G T A C G A T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AWTWGCCATTCAT--
---RGCCATYAATCA
 C G T A C G A T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AWTWGCCATTCAT---
NNCATTCATTCATNNN
 C G T A C G A T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C G C T A A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Hoxd8/MA0910.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AWTWGCCATTCAT------
--NAGCCATTAATTANTTA
 C G T A C G A T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

PH0080.1_Hoxd8/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AWTWGCCATTCAT------
--NAGCCATTAATTANTTA
 C G T A C G A T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AWTWGCCATTCAT
ATTTTCCATT---
 C G T A C G A T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C G C T A A C G T
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AWTWGCCATTCAT
---GGCCATTAAC
 C G T A C G A T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C G C T A A C G T
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AWTWGCCATTCAT
-SCTGTCAVTCAV
 C G T A C G A T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A G T C G C T A A C G T
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A