Information for 6-CWCAGTGACACWM (Motif 9)

A G T C C G A T A G T C C G T A A T C G A C G T A C T G G T C A A G T C C G T A A G T C C G T A T G C A
Reverse Opposite:
A C G T C G A T A C T G A C G T A C T G A C G T A G T C C G T A A T G C A C G T A C T G C G T A A C T G
p-value:1e-11
log p-value:-2.662e+01
Information Content per bp:1.890
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.3 +/- 14.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CWCAGTGACACWM
TGACCCAGTGACCTAC
 A C G T A C G T A C G T A G T C C G A T A G T C C G T A A T C G A C G T A C T G G T C A A G T C C G T A A G T C C G T A T G C A
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CWCAGTGACACWM
--NCGTGACN---
 A G T C C G A T A G T C C G T A A T C G A C G T A C T G G T C A A G T C C G T A A G T C C G T A T G C A
A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CWCAGTGACACWM
----TTGACAG--
 A G T C C G A T A G T C C G T A A T C G A C G T A C T G G T C A A G T C C G T A A G T C C G T A T G C A
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CWCAGTGACACWM
----TTGACAGG-
 A G T C C G A T A G T C C G T A A T C G A C G T A C T G G T C A A G T C C G T A A G T C C G T A T G C A
A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CWCAGTGACACWM
---VBTGWCAGCB
 A G T C C G A T A G T C C G T A A T C G A C G T A C T G G T C A A G T C C G T A A G T C C G T A T G C A
A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

FOS::JUN/MA0099.2/Jaspar

Match Rank:6
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CWCAGTGACACWM
-----TGACTCA-
 A G T C C G A T A G T C C G T A A T C G A C G T A C T G G T C A A G T C C G T A A G T C C G T A T G C A
A C G T A C G T A C G T A C G T A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CWCAGTGACACWM
--ARNTGACA---
 A G T C C G A T A G T C C G T A A T C G A C G T A C T G G T C A A G T C C G T A A G T C C G T A T G C A
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CWCAGTGACACWM
BTGABTGACAGS-
 A G T C C G A T A G T C C G T A A T C G A C G T A C T G G T C A A G T C C G T A A G T C C G T A T G C A
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CWCAGTGACACWM
NTGATTGACAGN-
 A G T C C G A T A G T C C G T A A T C G A C G T A C T G G T C A A G T C C G T A A G T C C G T A T G C A
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T

PH0164.1_Six4/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CWCAGTGACACWM----
ATAAATGACACCTATCA
 A G T C C G A T A G T C C G T A A T C G A C G T A C T G G T C A A G T C C G T A A G T C C G T A T G C A A C G T A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A