Information for 4-GMSCCCCGCHGCGCCC (Motif 4)

A T C G T G A C A T C G A T G C A G T C A T G C A G T C T C A G A T G C G T C A A C T G G T A C A C T G A T G C A T G C A T G C
Reverse Opposite:
A T C G T A C G A T C G T G A C A C T G A G T C C A G T A T C G A G T C C T A G A T C G T C A G A T C G T A G C A C T G A T G C
p-value:1e-14
log p-value:-3.254e+01
Information Content per bp:1.704
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets41.6 +/- 18.9bp
Average Position of motif in Background58.2 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC3/MA0697.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GMSCCCCGCHGCGCCC
GACCCCCCGCTGCGC--
 A C G T A T C G T G A C A T C G A T G C A G T C A T G C A G T C T C A G A T G C G T C A A C T G G T A C A C T G A T G C A T G C A T G C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GMSCCCCGCHGCGCCC
GACCCCCCGCTGTGC--
 A C G T A T C G T G A C A T C G A T G C A G T C A T G C A G T C T C A G A T G C G T C A A C T G G T A C A C T G A T G C A T G C A T G C
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GMSCCCCGCHGCGCCC
GACCCCCCGCTGTG---
 A C G T A T C G T G A C A T C G A T G C A G T C A T G C A G T C T C A G A T G C G T C A A C T G G T A C A C T G A T G C A T G C A T G C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GMSCCCCGCHGCGCCC-
---CCCCCTTGGGCCCC
 A T C G T G A C A T C G A T G C A G T C A T G C A G T C T C A G A T G C G T C A A C T G G T A C A C T G A T G C A T G C A T G C A C G T
A C G T A C G T A C G T A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GMSCCCCGCHGCGCCC
GGCCYCCTGCTGDGH--
 A C G T A T C G T G A C A T C G A T G C A G T C A T G C A G T C T C A G A T G C G T C A A C T G G T A C A C T G A T G C A T G C A T G C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GMSCCCCGCHGCGCCC----
----NNNGGGGCGCCCCCNN
 A T C G T G A C A T C G A T G C A G T C A T G C A G T C T C A G A T G C G T C A A C T G G T A C A C T G A T G C A T G C A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

SP2/MA0516.1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GMSCCCCGCHGCGCCC-
--GCCCCGCCCCCTCCC
 A T C G T G A C A T C G A T G C A G T C A T G C A G T C T C A G A T G C G T C A A C T G G T A C A C T G A T G C A T G C A T G C A C G T
A C G T A C G T A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GMSCCCCGCHGCGCCC
-GGCCCCGCCCCC---
 A T C G T G A C A T C G A T G C A G T C A T G C A G T C T C A G A T G C G T C A A C T G G T A C A C T G A T G C A T G C A T G C
A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GMSCCCCGCHGCGCCC
-------AGCGCGCC-
 A T C G T G A C A T C G A T G C A G T C A T G C A G T C T C A G A T G C G T C A A C T G G T A C A C T G A T G C A T G C A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

GLIS2/MA0736.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GMSCCCCGCHGCGCCC
GACCCCCCGCGAAG---
 A C G T A T C G T G A C A T C G A T G C A G T C A T G C A G T C T C A G A T G C G T C A A C T G G T A C A C T G A T G C A T G C A T G C
A C T G T C G A A G T C G T A C G A T C G T A C G T A C G A T C C T A G A G T C C T A G C T G A G T C A A T C G A C G T A C G T A C G T