Information for 13-TGRATMCGBGGTG (Motif 18)

A G C T A C T G T C G A C T G A A C G T G T C A T A G C C T A G A T C G C T A G A T C G A G C T A C T G
Reverse Opposite:
G T A C C T G A A T G C A G T C T A G C G A T C A C T G A C G T G T C A A G C T A G C T A G T C C T G A
p-value:1e-8
log p-value:-2.009e+01
Information Content per bp:1.728
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.7 +/- 13.2bp
Average Position of motif in Background31.5 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGRATMCGBGGTG
ATGMATATDC----
 A C G T A G C T A C T G T C G A C T G A A C G T G T C A T A G C C T A G A T C G C T A G A T C G A G C T A C T G
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T

ZNF143/MA0088.2/Jaspar

Match Rank:2
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TGRATMCGBGGTG
CAATGCATTGTGGGTA
 A C G T A C G T A C G T A G C T A C T G T C G A C T G A A C G T G T C A T A G C C T A G A T C G C T A G A T C G A G C T A C T G
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------TGRATMCGBGGTG
NTTNTATGAATGTGNNC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G T C G A C T G A A C G T G T C A T A G C C T A G A T C G C T A G A T C G A G C T A C T G
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C A C G T A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----TGRATMCGBGGTG
CTACTTGGATACGGAAT-
 A C G T A C G T A C G T A C G T A C G T A G C T A C T G T C G A C T G A A C G T G T C A T A G C C T A G A T C G C T A G A T C G A G C T A C T G
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGRATMCGBGGTG
ATGAATATTC----
 A C G T A G C T A C T G T C G A C T G A A C G T G T C A T A G C C T A G A T C G C T A G A T C G A G C T A C T G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TGRATMCGBGGTG--
TGCGCATAGGGGAGGAG
 A C G T A C G T A G C T A C T G T C G A C T G A A C G T G T C A T A G C C T A G A T C G C T A G A T C G A G C T A C T G A C G T A C G T
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.52
Offset:-7
Orientation:reverse strand
Alignment:-------TGRATMCGBGGTG
NNTNTCATGAATGT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G T C G A C T G A A C G T G T C A T A G C C T A G A T C G C T A G A T C G A G C T A C T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TGRATMCGBGGTG--
RGSMTBCTGGGAAAT
 A G C T A C T G T C G A C T G A A C G T G T C A T A G C C T A G A T C G C T A G A T C G A G C T A C T G A C G T A C G T
C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:TGRATMCGBGGTG-----
--NNTNAGGGGCGGNNNN
 A G C T A C T G T C G A C T G A A C G T G T C A T A G C C T A G A T C G C T A G A T C G A G C T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:10
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---TGRATMCGBGGTG-
CATACAATACGAAATAA
 A C G T A C G T A C G T A G C T A C T G T C G A C T G A A C G T G T C A T A G C C T A G A T C G C T A G A T C G A G C T A C T G A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A