Information for 4-TTTTGTGGCT (Motif 12)

A G C T A G C T A G C T C G A T A T C G G A C T C T A G C T A G A T G C A C G T
Reverse Opposite:
C G T A T A C G A G T C A G T C C T G A A T G C C G T A C T G A C T G A T C G A
p-value:1e-9
log p-value:-2.300e+01
Information Content per bp:1.712
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif4.14%
Number of Background Sequences with motif238.1
Percentage of Background Sequences with motif1.07%
Average Position of motif in Targets40.7 +/- 26.0bp
Average Position of motif in Background50.3 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TTTTGTGGCT-
GTCTGTGGTTT
 A G C T A G C T A G C T C G A T A T C G G A C T C T A G C T A G A T G C A C G T A C G T
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TTTTGTGGCT-
-NNTGTGGTTT
 A G C T A G C T A G C T C G A T A T C G G A C T C T A G C T A G A T G C A C G T A C G T
A C G T A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T

RUNX3/MA0684.1/Jaspar

Match Rank:3
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TTTTGTGGCT-
-TTTGCGGTTT
 A G C T A G C T A G C T C G A T A T C G G A C T C T A G C T A G A T G C A C G T A C G T
A C G T C G A T A G C T A C G T T A C G A G T C A T C G A C T G A C G T A G C T C G A T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTTTGTGGCT--
NNHTGTGGTTWN
 A G C T A G C T A G C T C G A T A T C G G A C T C T A G C T A G A T G C A C G T A C G T A C G T
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TTTTGTGGCT--
--CTGTGGTTTN
 A G C T A G C T A G C T C G A T A T C G G A C T C T A G C T A G A T G C A C G T A C G T A C G T
A C G T A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

RUNX2/MA0511.2/Jaspar

Match Rank:6
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TTTTGTGGCT-
--TTGCGGTTT
 A G C T A G C T A G C T C G A T A T C G G A C T C T A G C T A G A T G C A C G T A C G T
A C G T A C G T A G C T A C G T A C T G G A T C A C T G A C T G A C G T G A C T C G A T

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTTTGTGGCT-
TTTTATGGCTN
 A G C T A G C T A G C T C G A T A T C G G A C T C T A G C T A G A T G C A C G T A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TTTTGTGGCT-
-GCTGTGGTTT
 A G C T A G C T A G C T C G A T A T C G G A C T C T A G C T A G A T G C A C G T A C G T
A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTTTGTGGCT--
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T A G C T A G C T A G C T C G A T A T C G G A C T C T A G C T A G A T G C A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTTTGTGGCT
NTTTTATGAC-
 A C G T A G C T A G C T A G C T C G A T A T C G G A C T C T A G C T A G A T G C A C G T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T