Information for 3-CAGTCTAAAA (Motif 10)

A G T C C G T A C A T G A G C T A G T C G A C T T C G A G T C A C T G A C G T A
Reverse Opposite:
A C G T A G C T A C G T A G C T C T G A C T A G C T G A G T A C C G A T A C T G
p-value:1e-10
log p-value:-2.470e+01
Information Content per bp:1.837
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif45.7
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets48.9 +/- 25.8bp
Average Position of motif in Background49.5 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGTCTAAAA
CGGTTTCAAA
 A G T C C G T A C A T G A G C T A G T C G A C T T C G A G T C A C T G A C G T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAGTCTAAAA-------
--GTATAAAAGGCGGGG
 A G T C C G T A C A T G A G C T A G T C G A C T T C G A G T C A C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAGTCTAAAA-------
--GTATAAAAGGCGGGG
 A G T C C G T A C A T G A G C T A G T C G A C T T C G A G T C A C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0090.1_Zbtb12_1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCTAAAA------
NNGATCTAGAACCTNNN
 A C G T A G T C C G T A C A T G A G C T A G T C G A C T T C G A G T C A C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAGTCTAAAA--
GNCTATAAAAGG
 A G T C C G T A C A T G A G C T A G T C G A C T T C G A G T C A C T G A C G T A A C G T A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAGTCTAAAA----
TAAAGTCGTAAAACGT
 A C G T A C G T A G T C C G T A C A T G A G C T A G T C G A C T T C G A G T C A C T G A C G T A A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

POL002.1_INR/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGTCTAAAA
TCAGTCTT---
 A C G T A G T C C G T A C A T G A G C T A G T C G A C T T C G A G T C A C T G A C G T A
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAGTCTAAAA--
-AGTCGTAAAAA
 A G T C C G T A C A T G A G C T A G T C G A C T T C G A G T C A C T G A C G T A A C G T A C G T
A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

MEF2A/MA0052.3/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAGTCTAAAA-----
---TCTAAAAATAGA
 A G T C C G T A C A T G A G C T A G T C G A C T T C G A G T C A C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A

PH0047.1_Hoxa11/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAGTCTAAAA----
TAAAGTCGTAAAACAT
 A C G T A C G T A G T C C G T A C A T G A G C T A G T C G A C T T C G A G T C A C T G A C G T A A C G T A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T