Information for 9-GNATYCATAA (Motif 39)

C A T G T C G A C G T A G A C T A G C T G T A C G C T A A G C T C T G A T C G A
Reverse Opposite:
A G C T G A C T T C G A C G A T C A T G T C G A C T G A G C A T A G C T G T A C
p-value:1e-6
log p-value:-1.588e+01
Information Content per bp:1.541
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif49.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets53.7 +/- 21.2bp
Average Position of motif in Background47.2 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GNATYCATAA----
ACATTCATGACACG
 C A T G T C G A C G T A G A C T A G C T G T A C G C T A A G C T C T G A T C G A A C G T A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GNATYCATAA--
--ATGMATATDC
 C A T G T C G A C G T A G A C T A G C T G T A C G C T A A G C T C T G A T C G A A C G T A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GNATYCATAA----
AAAATATGCATAATAAA
 A C G T A C G T A C G T C A T G T C G A C G T A G A C T A G C T G T A C G C T A A G C T C T G A T C G A A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GNATYCATAA--
--ATGAATATTC
 C A T G T C G A C G T A G A C T A G C T G T A C G C T A A G C T C T G A T C G A A C G T A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GNATYCATAA
DGATCRATAN
 C A T G T C G A C G T A G A C T A G C T G T A C G C T A A G C T C T G A T C G A
C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GNATYCATAA----
--ATGCATAATTCA
 C A T G T C G A C G T A G A C T A G C T G T A C G C T A A G C T C T G A T C G A A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GNATYCATAA---
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T C A T G T C G A C G T A G A C T A G C T G T A C G C T A A G C T C T G A T C G A A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PH0150.1_Pou4f3/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GNATYCATAA--
GACNTCATTAATAANN
 A C G T A C G T A C G T A C G T C A T G T C G A C G T A G A C T A G C T G T A C G C T A A G C T C T G A T C G A A C G T A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

CUX2/MA0755.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GNATYCATAA
TAATCGATAA
 C A T G T C G A C G T A G A C T A G C T G T A C G C T A A G C T C T G A T C G A
G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A

ONECUT3/MA0757.1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GNATYCATAA-
AAAAAATCAATAAT
 A C G T A C G T A C G T C A T G T C G A C G T A G A C T A G C T G T A C G C T A A G C T C T G A T C G A A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T