Information for 6-AVCTTGGCAAAGA (Motif 18)

G T C A T A G C A G T C A C G T A G C T C T A G A C T G A G T C C G T A C T G A C G T A A C T G G T C A
Reverse Opposite:
A C G T A G T C A C G T A G C T A C G T C T A G A G T C A G T C C T G A C G T A A C T G A C T G A C G T
p-value:1e-10
log p-value:-2.497e+01
Information Content per bp:1.845
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.3 +/- 23.3bp
Average Position of motif in Background51.8 +/- 11.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AVCTTGGCAAAGA
-NNTTGGCANN--
 G T C A T A G C A G T C A C G T A G C T C T A G A C T G A G T C C G T A C T G A C G T A A C T G G T C A
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AVCTTGGCAAAGA
--CTTGGCAA---
 G T C A T A G C A G T C A C G T A G C T C T A G A C T G A G T C C G T A C T G A C G T A A C T G G T C A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AVCTTGGCAAAGA-
TACCATAGCAACGGT
 A C G T G T C A T A G C A G T C A C G T A G C T C T A G A C T G A G T C C G T A C T G A C G T A A C T G G T C A A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AVCTTGGCAAAGA
---TTGGCA----
 G T C A T A G C A G T C A C G T A G C T C T A G A C T G A G T C C G T A C T G A C G T A A C T G G T C A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AVCTTGGCAAAGA
--NTTGGCANN--
 G T C A T A G C A G T C A C G T A G C T C T A G A C T G A G T C C G T A C T G A C G T A A C T G G T C A
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AVCTTGGCAAAGA-
CCGCATAGCAACGGA
 A C G T G T C A T A G C A G T C A C G T A G C T C T A G A C T G A G T C C G T A C T G A C G T A A C T G G T C A A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AVCTTGGCAAAGA-----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T G T C A T A G C A G T C A C G T A G C T C T A G A C T G A G T C C G T A C T G A C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AVCTTGGCAAAGA
WDNCTGGGCA----
 A C G T G T C A T A G C A G T C A C G T A G C T C T A G A C T G A G T C C G T A C T G A C G T A A C T G G T C A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AVCTTGGCAAAGA
AAGCTTG-------
 A C G T G T C A T A G C A G T C A C G T A G C T C T A G A C T G A G T C C G T A C T G A C G T A A C T G G T C A
C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AVCTTGGCAAAGA--
NNNVCTGWGYAAACASN
 A C G T A C G T G T C A T A G C A G T C A C G T A G C T C T A G A C T G A G T C C G T A C T G A C G T A A C T G G T C A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A