Information for 10-AMCTCAAASCCCTCAR (Motif 12)

G T C A G T A C A G T C C G A T A G T C C G T A C T G A C G T A A T G C A T G C A G T C A G T C C G A T A G T C C G T A C T G A
Reverse Opposite:
A G C T A C G T T A C G C G T A A C T G C T A G A T C G A T C G A C G T A G C T G C A T C T A G C G T A A C T G A C T G A C G T
p-value:1e-11
log p-value:-2.739e+01
Information Content per bp:1.770
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.5 +/- 22.7bp
Average Position of motif in Background35.1 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2C2/MA0504.1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AMCTCAAASCCCTCAR
TGACCTCTGACCCCN---
 A C G T A C G T G T C A G T A C A G T C C G A T A G T C C G T A C T G A C G T A A T G C A T G C A G T C A G T C C G A T A G T C C G T A C T G A
G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.59
Offset:6
Orientation:forward strand
Alignment:AMCTCAAASCCCTCAR-
------AGCCACTCAAG
 G T C A G T A C A G T C C G A T A G T C C G T A C T G A C G T A A T G C A T G C A G T C A G T C C G A T A G T C C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AMCTCAAASCCCTCAR
------AASCACTCAA
 G T C A G T A C A G T C C G A T A G T C C G T A C T G A C G T A A T G C A T G C A G T C A G T C C G A T A G T C C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AMCTCAAASCCCTCAR
TGACCTTTGACCTC----
 A C G T A C G T G T C A G T A C A G T C C G A T A G T C C G T A C T G A C G T A A T G C A T G C A G T C A G T C C G A T A G T C C G T A C T G A
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.55
Offset:6
Orientation:forward strand
Alignment:AMCTCAAASCCCTCAR
------AAGCACTTAA
 G T C A G T A C A G T C C G A T A G T C C G T A C T G A C G T A A T G C A T G C A G T C A G T C C G A T A G T C C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

RXRG/MA0856.1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AMCTCAAASCCCTCAR
TGACCTTTGACCCC----
 A C G T A C G T G T C A G T A C A G T C C G A T A G T C C G T A C T G A C G T A A T G C A T G C A G T C A G T C C G A T A G T C C G T A C T G A
A G C T T C A G T G C A G T A C G T A C G A C T G A C T G A C T T C A G T G C A G T A C G T A C A G T C A G T C A C G T A C G T A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AMCTCAAASCCCTCAR
TGACCTTTGACCCC----
 A C G T A C G T G T C A G T A C A G T C C G A T A G T C C G T A C T G A C G T A A T G C A T G C A G T C A G T C C G A T A G T C C G T A C T G A
A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G A T C A G T C A G T C A C G T A C G T A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AMCTCAAASCCCTCAR
TGACCTTTGACCCC----
 A C G T A C G T G T C A G T A C A G T C C G A T A G T C C G T A C T G A C G T A A T G C A T G C A G T C A G T C C G A T A G T C C G T A C T G A
A G C T T C A G T G C A T G A C T A G C A G C T G A C T A G C T T C A G T G C A G T A C G T A C A G T C A G T C A C G T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AMCTCAAASCCCTCAR-
NNNNTTGACCCCTNNNN
 G T C A G T A C A G T C C G A T A G T C C G T A C T G A C G T A A T G C A T G C A G T C A G T C C G A T A G T C C G T A C T G A A C G T
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AMCTCAAASCCCTCAR----
---CATAACCACTTAACAAC
 G T C A G T A C A G T C C G A T A G T C C G T A C T G A C G T A A T G C A T G C A G T C A G T C C G A T A G T C C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C