Information for 9-AGGGCAAACG (Motif 44)

C G T A A C T G A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T
p-value:1e-6
log p-value:-1.434e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.7 +/- 18.4bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAAACG---
TAGGGCAAAGGTCA
 A C G T C G T A A C T G A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C T G A C G T A C G T A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAAACG---
GTAGGGCAAAGGTCA
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C T G A C G T A C G T A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCAAACG
TNNGGGCAG---
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGGGCAAACG---
TGGGGCAAAGGTCA
 A C G T C G T A A C T G A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C T G A C G T A C G T A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGGGCAAACG
CAAAGGTCAAGGG
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C T G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AGGGCAAACG-
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C T G A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAAACG
TRAGGTCA----
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAAACG---
GAGGTCAAAGGTCA
 A C G T C G T A A C T G A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C T G A C G T A C G T A C G T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAAACG---
GAGGTCAAAGGTCA
 A C G T C G T A A C T G A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C T G A C G T A C G T A C G T
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Rarb/MA0857.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAAACG----
AAAGGTCAAAAGGTCA
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A C G T A C G T A A G T C A C T G A C G T A C G T A C G T A C G T
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A