Information for 21-TWAATGCATTTTGGCT (Motif 38)

G C A T C G A T C G T A T G C A A G C T A C T G A G T C C G T A C G A T G A C T A C G T A C G T C A T G A C T G T G A C A C G T
Reverse Opposite:
C G T A A C T G T A G C G T A C G T C A C G T A C G T A C G T A A C G T A C T G G T A C C T G A A C G T G A C T C G T A C G T A
p-value:1e-7
log p-value:-1.700e+01
Information Content per bp:1.695
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif44.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets49.6 +/- 26.6bp
Average Position of motif in Background54.2 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TWAATGCATTTTGGCT
CCTTAATNGNTTTT----
 A C G T A C G T G C A T C G A T C G T A T G C A A G C T A C T G A G T C C G T A C G A T G A C T A C G T A C G T C A T G A C T G T G A C A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T A C G T A C G T A C G T A C G T

PH0088.1_Isl2/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TWAATGCATTTTGGCT
AAATTAATTGATTTNG---
 A C G T A C G T A C G T G C A T C G A T C G T A T G C A A G C T A C T G A G T C C G T A C G A T G A C T A C G T A C G T C A T G A C T G T G A C A C G T
C T G A G C T A G T C A G A C T G C A T C G T A C G T A A C G T A C G T C T A G T C G A C A G T C A G T C A G T C G A T C A T G A C G T A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TWAATGCATTTTGGCT--
---ATGCATWATGCATRW
 G C A T C G A T C G T A T G C A A G C T A C T G A G T C C G T A C G A T G A C T A C G T A C G T C A T G A C T G T G A C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TWAATGCATTTTGGCT
NNTGTTTATTTTGGCA
 G C A T C G A T C G T A T G C A A G C T A C T G A G T C C G T A C G A T G A C T A C G T A C G T C A T G A C T G T G A C A C G T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

ZNF143/MA0088.2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TWAATGCATTTTGGCT-
-CAATGCATTGTGGGTA
 G C A T C G A T C G T A T G C A A G C T A C T G A G T C C G T A C G A T G A C T A C G T A C G T C A T G A C T G T G A C A C G T A C G T
A C G T G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

ONECUT3/MA0757.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TWAATGCATTTTGGCT
NTTATTGATTTTTT--
 G C A T C G A T C G T A T G C A A G C T A C T G A G T C C G T A C G A T G A C T A C G T A C G T C A T G A C T G T G A C A C G T
C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T A C G T A C G T

ONECUT2/MA0756.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TWAATGCATTTTGGCT
ATTATCGATTTTTT--
 G C A T C G A T C G T A T G C A A G C T A C T G A G T C C G T A C G A T G A C T A C G T A C G T C A T G A C T G T G A C A C G T
C G T A C G A T G C A T C G T A C G A T A G T C C A T G G T C A G A C T G A C T C G A T G C A T G A C T A G C T A C G T A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TWAATGCATTTTGGCT
GATTAATTAATTT-----
 A C G T A C G T G C A T C G A T C G T A T G C A A G C T A C T G A G T C C G T A C G A T G A C T A C G T A C G T C A T G A C T G T G A C A C G T
T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TWAATGCATTTTGGCT
---ATGAATATTC---
 G C A T C G A T C G T A T G C A A G C T A C T G A G T C C G T A C G A T G A C T A C G T A C G T C A T G A C T G T G A C A C G T
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TWAATGCATTTTGGCT
-TCATGAATWATTCAT
 G C A T C G A T C G T A T G C A A G C T A C T G A G T C C G T A C G A T G A C T A C G T A C G T C A T G A C T G T G A C A C G T
A C G T G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T