Information for 9-TTATAGCTCACAT (Motif 30)

A C G T A C G T C G T A A C G T C G T A A T C G A G T C A G C T A G T C C G T A A T G C C G T A A C G T
Reverse Opposite:
C G T A A C G T A T C G A C G T A C T G C T G A A C T G A T G C A C G T C G T A C G A T C G T A C G T A
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.8 +/- 11.1bp
Average Position of motif in Background38.3 +/- 9.6bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTATAGCTCACAT
TTTTATGGCTN----
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A A T C G A G T C A G C T A G T C C G T A A T G C C G T A A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TTATAGCTCACAT-
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A A T C G A G T C A G C T A G T C C G T A A T G C C G T A A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.54
Offset:-9
Orientation:reverse strand
Alignment:---------TTATAGCTCACAT
NNNNNNCTTTTATAN-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A T C G A G T C A G C T A G T C C G T A A T G C C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.53
Offset:-9
Orientation:reverse strand
Alignment:---------TTATAGCTCACAT
NNNNNNCTTTTATAN-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A T C G A G T C A G C T A G T C C G T A A T G C C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TTATAGCTCACAT
ATCAAGGTCA---
 A C G T A C G T C G T A A C G T C G T A A T C G A G T C A G C T A G T C C G T A A T G C C G T A A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

USF2/MA0526.1/Jaspar

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TTATAGCTCACAT---
-----GGTCACATGAC
 A C G T A C G T C G T A A C G T C G T A A T C G A G T C A G C T A G T C C G T A A T G C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TTATAGCTCACAT
TTTTATTGC------
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A A T C G A G T C A G C T A G T C C G T A A T G C C G T A A C G T
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:8
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------TTATAGCTCACAT
CTAAGGTTCTAGATCAC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A T C G A G T C A G C T A G T C C G T A A T G C C G T A A C G T
A T G C A C G T G C T A T C G A A C T G C T A G C G A T C G A T A G T C A G C T T C G A C T A G T C G A G C A T A G T C T G C A A G T C A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TTATAGCTCACAT----
-CGAAGCACACAAAATA
 A C G T A C G T C G T A A C G T C G T A A T C G A G T C A G C T A G T C C G T A A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------TTATAGCTCACAT
NGANTTTTATGGCTCN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A T C G A G T C A G C T A G T C C G T A A T G C C G T A A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T A C G T A C G T