Information for 3-TTATATTGCC (Motif 23)

A C G T A C G T G T C A A C G T G T C A C G A T A C G T A C T G A T G C A G T C
Reverse Opposite:
C T A G A T C G G T A C C G T A C G T A C A G T C G T A C A G T C G T A G T C A
p-value:1e-9
log p-value:-2.255e+01
Information Content per bp:1.849
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif71.6
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets54.0 +/- 23.1bp
Average Position of motif in Background50.2 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)-2.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0013.1_Cdx2/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TTATATTGCC---
NAATTTTATTACCNNN
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T G T C A C G A T A C G T A C T G A T G C A G T C A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTATATTGCC-
TTTTATGGCTN
 A C G T A C G T G T C A A C G T G T C A C G A T A C G T A C T G A T G C A G T C A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTATATTGCC
NTTTTATTACN
 A C G T A C G T A C G T G T C A A C G T G T C A C G A T A C G T A C T G A T G C A G T C
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TTATATTGCC
TTTTATTGC-
 A C G T A C G T G T C A A C G T G T C A C G A T A C G T A C T G A T G C A G T C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTATATTGCC
TTTTTATTGG-
 A C G T A C G T A C G T G T C A A C G T G T C A C G A T A C G T A C T G A T G C A G T C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTATATTGCC
NTTTTATGAC-
 A C G T A C G T A C G T G T C A A C G T G T C A C G A T A C G T A C T G A T G C A G T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TTATATTGCC---
NAATTTTATTACCTNN
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T G T C A C G A T A C G T A C T G A T G C A G T C A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TTATATTGCC--
TNAATTTTATTACCTN
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T G T C A C G A T A C G T A C T G A T G C A G T C A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

Hoxd9/MA0913.1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTATATTGCC
TTTTTATTGC-
 A C G T A C G T A C G T G T C A A C G T G T C A C G A T A C G T A C T G A T G C A G T C
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTATATTGCC--
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T G T C A C G A T A C G T A C T G A T G C A G T C A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T