Information for 11-GCCTCTCGNGGCTGCA (Motif 13)

A C T G A G T C A G T C A C G T A T G C A G C T A G T C T A C G C G A T A C T G A T C G A G T C A C G T C T A G A T G C T C G A
Reverse Opposite:
A G C T A T C G A G T C G T C A A C T G A T G C G T A C C G T A A T G C A C T G C T G A A T C G C G T A C T A G A C T G G T A C
p-value:1e-11
log p-value:-2.578e+01
Information Content per bp:1.756
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif10.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets30.8 +/- 24.7bp
Average Position of motif in Background57.1 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCCTCTCGNGGCTGCA
AGCCACTCAAG------
 A C G T A C T G A G T C A G T C A C G T A T G C A G C T A G T C T A C G C G A T A C T G A T C G A G T C A C G T C T A G A T G C T C G A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:GCCTCTCGNGGCTGCA
NSCACTYVAV------
 A C T G A G T C A G T C A C G T A T G C A G C T A G T C T A C G C G A T A C T G A T C G A G T C A C G T C T A G A T G C T C G A
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:GCCTCTCGNGGCTGCA
-GCTGTCAA-------
 A C T G A G T C A G T C A C G T A T G C A G C T A G T C T A C G C G A T A C T G A T C G A G T C A C G T C T A G A T G C T C G A
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:GCCTCTCGNGGCTGCA
-CCTGTCAA-------
 A C T G A G T C A G T C A C G T A T G C A G C T A G T C T A C G C G A T A C T G A T C G A G T C A C G T C T A G A T G C T C G A
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.48
Offset:0
Orientation:forward strand
Alignment:GCCTCTCGNGGCTGCA
RSCACTYRAG------
 A C T G A G T C A G T C A C G T A T G C A G C T A G T C T A C G C G A T A C T G A T C G A G T C A C G T C T A G A T G C T C G A
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-GCCTCTCGNGGCTGCA
AASCACTCAA-------
 A C G T A C T G A G T C A G T C A C G T A T G C A G C T A G T C T A C G C G A T A C T G A T C G A G T C A C G T C T A G A T G C T C G A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:7
Score:0.47
Offset:-2
Orientation:forward strand
Alignment:--GCCTCTCGNGGCTGCA
ACCACTCTCGGTCAC---
 A C G T A C G T A C T G A G T C A G T C A C G T A T G C A G C T A G T C T A C G C G A T A C T G A T C G A G T C A C G T C T A G A T G C T C G A
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.47
Offset:9
Orientation:reverse strand
Alignment:GCCTCTCGNGGCTGCA
---------NGCTN--
 A C T G A G T C A G T C A C G T A T G C A G C T A G T C T A C G C G A T A C T G A T C G A G T C A C G T C T A G A T G C T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.46
Offset:0
Orientation:forward strand
Alignment:GCCTCTCGNGGCTGCA
GCTTCC----------
 A C T G A G T C A G T C A C G T A T G C A G C T A G T C T A C G C G A T A C T G A T C G A G T C A C G T C T A G A T G C T C G A
A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:10
Score:0.46
Offset:-5
Orientation:reverse strand
Alignment:-----GCCTCTCGNGGCTGCA
TAGCGCCCCCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A T G C A G C T A G T C T A C G C G A T A C T G A T C G A G T C A C G T C T A G A T G C T C G A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T