Information for 17-GGATGCAGCCACT (Motif 28)

A C T G A C T G C G T A A C G T A C T G A G T C C G T A A C T G A G T C A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C T G A C T G A G T C A C G T A C T G A G T C C G T A A C G T A G T C A G T C
p-value:1e-7
log p-value:-1.647e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.2 +/- 22.8bp
Average Position of motif in Background23.4 +/- 1.3bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GGATGCAGCCACT---
------MRSCACTYAA
 A C T G A C T G C G T A A C G T A C T G A G T C C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GGATGCAGCCACT
----BCAGACWA-
 A C T G A C T G C G T A A C G T A C T G A G T C C G T A A C T G A G T C A G T C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:3
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GGATGCAGCCACT-------
----TAAGCCACTTAACATT
 A C T G A C T G C G T A A C G T A C T G A G T C C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GGATGCAGCCACT-------
----TAAGCCACTTGAAATT
 A C T G A C T G C G T A A C G T A C T G A G T C C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GGATGCAGCCACT--
---ACTAGCCAATCA
 A C T G A C T G C G T A A C G T A C T G A G T C C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GGATGCAGCCACT---
------AASCACTCAA
 A C T G A C T G C G T A A C G T A C T G A G T C C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGATGCAGCCACT
ADGGYAGYAGCATCT
 A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C C G T A A C T G A G T C A G T C C G T A A G T C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GGATGCAGCCACT
-----CAGCC---
 A C T G A C T G C G T A A C G T A C T G A G T C C G T A A C T G A G T C A G T C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGATGCAGCCACT
CTGGCAGNCTGCCA--
 A C G T A C G T A C G T A C T G A C T G C G T A A C G T A C T G A G T C C G T A A C T G A G T C A G T C C G T A A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GGATGCAGCCACT----
------AGCCACTCAAG
 A C T G A C T G C G T A A C G T A C T G A G T C C G T A A C T G A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G