Information for 5-GAGAGACTGCTCC (Motif 9)

A C T G C G T A A C T G C G T A A T C G C T G A A T G C C G A T C T A G A T G C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G G T C A A T C G A G T C G C T A A T C G A G C T A T G C A C G T A G T C A C G T A G T C
p-value:1e-11
log p-value:-2.552e+01
Information Content per bp:1.841
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.2 +/- 27.2bp
Average Position of motif in Background69.0 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGACTGCTCC
NNNACCGAGAGTNNN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A T C G C T G A A T G C C G A T C T A G A T G C A C G T A G T C A G T C
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGACTGCTCC
CTTGAGTGGCT-----
 A C G T A C G T A C G T A C T G C G T A A C T G C G T A A T C G C T G A A T G C C G A T C T A G A T G C A C G T A G T C A G T C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAGAGACTGCTCC-
----CNGTCCTCCC
 A C T G C G T A A C T G C G T A A T C G C T G A A T G C C G A T C T A G A T G C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGACTGCTCC
NTGATTGACAGN---
 A C G T A C G T A C T G C G T A A C T G C G T A A T C G C T G A A T G C C G A T C T A G A T G C A C G T A G T C A G T C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GAGAGACTGCTCC
AGGTGNCAGACAG----
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A T C G C T G A A T G C C G A T C T A G A T G C A C G T A G T C A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.53
Offset:8
Orientation:forward strand
Alignment:GAGAGACTGCTCC-
--------GCTCCG
 A C T G C G T A A C T G C G T A A T C G C T G A A T G C C G A T C T A G A T G C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGACTGCTCC
TTGAGTGSTT-----
 A C G T A C G T A C T G C G T A A C T G C G T A A T C G C T G A A T G C C G A T C T A G A T G C A C G T A G T C A G T C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGACTGCTCC
TGAGTGACAGSC--
 A C G T A C T G C G T A A C T G C G T A A T C G C T G A A T G C C G A T C T A G A T G C A C G T A G T C A G T C
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----GAGAGACTGCTCC
AGGTGHCAGACA-----
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A T C G C T G A A T G C C G A T C T A G A T G C A C G T A G T C A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGACTGCTCC
BTGABTGACAGS---
 A C G T A C G T A C T G C G T A A C T G C G T A A T C G C T G A A T G C C G A T C T A G A T G C A C G T A G T C A G T C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T