Information for 3-GCGGATTTCHGAG (Motif 7)

A T C G A T G C T C A G C A T G C T G A A G C T A C G T A C G T A G T C G A C T A T C G C G T A A C T G
Reverse Opposite:
A G T C G C A T T A G C C G T A A C T G G T C A C G T A C T G A G A C T G T A C A G T C T A C G A T G C
p-value:1e-12
log p-value:-2.873e+01
Information Content per bp:1.722
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif52.8
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets48.6 +/- 24.1bp
Average Position of motif in Background49.7 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCGGATTTCHGAG
GGGGATTTCC---
 A T C G A T G C T C A G C A T G C T G A A G C T A C G T A C G T A G T C G A C T A T C G C G T A A C T G
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCGGATTTCHGAG
GGGAATTTCC---
 A T C G A T G C T C A G C A T G C T G A A G C T A C G T A C G T A G T C G A C T A T C G C G T A A C T G
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCGGATTTCHGAG
GGGAATTTCC---
 A T C G A T G C T C A G C A T G C T G A A G C T A C G T A C G T A G T C G A C T A T C G C G T A A C T G
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCGGATTTCHGAG
GGGGATTTCC---
 A T C G A T G C T C A G C A T G C T G A A G C T A C G T A C G T A G T C G A C T A T C G C G T A A C T G
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCGGATTTCHGAG
NGGGGATTTCCC--
 A C G T A T C G A T G C T C A G C A T G C T G A A G C T A C G T A C G T A G T C G A C T A T C G C G T A A C T G
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GCGGATTTCHGAG---
----NTTTCTNAGAAA
 A T C G A T G C T C A G C A T G C T G A A G C T A C G T A C G T A G T C G A C T A T C G C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GCGGATTTCHGAG--
----ATTTCCAAGAA
 A T C G A T G C T C A G C A T G C T G A A G C T A C G T A C G T A G T C G A C T A T C G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCGGATTTCHGAG
NNTGTGGATTSS----
 A C G T A C G T A C G T A T C G A T G C T C A G C A T G C T G A A G C T A C G T A C G T A G T C G A C T A T C G C G T A A C T G
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCGGATTTCHGAG
--TGGTTTCAGT-
 A T C G A T G C T C A G C A T G C T G A A G C T A C G T A C G T A G T C G A C T A T C G C G T A A C T G
A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T A C G T

ELF1/MA0473.2/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCGGATTTCHGAG--
---NACTTCCGGGTT
 A T C G A T G C T C A G C A T G C T G A A G C T A C G T A C G T A G T C G A C T A T C G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A G T C C T G A G A T C C G A T A G C T A G T C A G T C A C T G A T C G C A T G C G A T G C A T