Information for 22-GAGCACATTGTGC (Motif 44)

C A T G T G C A A C T G A G T C C G T A A G T C C G T A A G C T A C G T A C T G A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A G T C C G T A T C G A C G A T A C T G A C G T A C T G A G T C A C G T G A T C
p-value:1e-5
log p-value:-1.217e+01
Information Content per bp:1.933
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.7 +/- 34.9bp
Average Position of motif in Background43.7 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GAGCACATTGTGC
---CTCATTGTC-
 C A T G T G C A A C T G A G T C C G T A A G T C C G T A A G C T A C G T A C T G A C G T A C T G A G T C
A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAGCACATTGTGC-
NAGAACAGNCTGTNCT
 A C G T A C G T C A T G T G C A A C T G A G T C C G T A A G T C C G T A A G C T A C G T A C T G A C G T A C T G A G T C A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGCACATTGTGC
AAGAACATWHTGTTC
 A C G T A C G T C A T G T G C A A C T G A G T C C G T A A G T C C G T A A G C T A C G T A C T G A C G T A C T G A G T C
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAGCACATTGTGC--
GRACAGWMTGTYCTB
 C A T G T G C A A C T G A G T C C G T A A G T C C G T A A G C T A C G T A C T G A C G T A C T G A G T C A C G T A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

NR3C2/MA0727.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGCACATTGTGC--
GGGAACACAATGTTCCC
 A C G T A C G T C A T G T G C A A C T G A G T C C G T A A G T C C G T A A G C T A C G T A C T G A C G T A C T G A G T C A C G T A C G T
C A T G C T A G C A T G C G T A T G C A A T G C C T G A G A T C C G T A C T G A G A C T A T C G G A C T G C A T G A T C A G T C G T A C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGCACATTGTGC--
AGNACANNNTGTNCTN
 A C G T C A T G T G C A A C T G A G T C C G T A A G T C C G T A A G C T A C G T A C T G A C G T A C T G A G T C A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAGCACATTGTGC
AGGVNCCTTTGT--
 A C G T C A T G T G C A A C T G A G T C C G T A A G T C C G T A A G C T A C G T A C T G A C G T A C T G A G T C
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAGCACATTGTGC---
TGTTCCCATTGTGTACT
 A C G T C A T G T G C A A C T G A G T C C G T A A G T C C G T A A G C T A C G T A C T G A C G T A C T G A G T C A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GAGCACATTGTGC
-----CTTTGT--
 C A T G T G C A A C T G A G T C C G T A A G T C C G T A A G C T A C G T A C T G A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T

Ar/MA0007.3/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAGCACATTGTGC--
NGGTACACNGTGTTCCC
 A C G T A C G T C A T G T G C A A C T G A G T C C G T A A G T C C G T A A G C T A C G T A C T G A C G T A C T G A G T C A C G T A C G T
C T A G C T A G C T A G G C A T C G T A T A G C C T G A A G T C A T G C T C A G A G C T A T C G A C G T C G A T G A T C G A T C G A T C