Information for 3-CTGGAAGTGGTTC (Motif 6)

A G T C A C G T A C T G A C T G C T G A C G T A C T A G C G A T A C T G T A C G C G A T A G C T A G T C
Reverse Opposite:
A C T G T C G A C G T A A T G C A G T C C G T A A G T C A C G T A G C T T A G C G T A C C G T A A C T G
p-value:1e-12
log p-value:-2.971e+01
Information Content per bp:1.815
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif15.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets52.2 +/- 15.5bp
Average Position of motif in Background60.0 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0114.1_Nkx2-5/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTGGAAGTGGTTC-
AAATTCAAGTGGNTTN
 A C G T A C G T A G T C A C G T A C T G A C T G C T G A C G T A C T A G C G A T A C T G T A C G C G A T A G C T A G T C A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

NKX2-3/MA0672.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTGGAAGTGGTTC
-NTCAAGTGGN--
 A G T C A C G T A C T G A C T G C T G A C G T A C T A G C G A T A C T G T A C G C G A T A G C T A G T C
A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGGAAGTGGTTC
--TTRAGTGSYK-
 A G T C A C G T A C T G A C T G C T G A C G T A C T A G C G A T A C T G T A C G C G A T A G C T A G T C
A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTGGAAGTGGTTC
--TTGAGTGSTT-
 A G T C A C G T A C T G A C T G C T G A C G T A C T A G C G A T A C T G T A C G C G A T A G C T A G T C
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGGAAGTGGTTC
-NTCAAGTGG---
 A G T C A C G T A C T G A C T G C T G A C G T A C T A G C G A T A C T G T A C G C G A T A G C T A G T C
A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTGGAAGTGGTTC
--TTAAGTGCTT-
 A G T C A C G T A C T G A C T G C T G A C G T A C T A G C G A T A C T G T A C G C G A T A G C T A G T C
A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGGAAGTGGTTC
ACAGGATGTGGT--
 A C G T A G T C A C G T A C T G A C T G C T G A C G T A C T A G C G A T A C T G T A C G C G A T A G C T A G T C
T C G A T A G C G T C A A C T G C T A G C G T A C G A T A C T G A C G T A C T G A C T G A C G T A C G T A C G T

ELK4/MA0076.2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTGGAAGTGGTTC
NCCGGAAGTGG---
 A C G T A G T C A C G T A C T G A C T G C T G A C G T A C T A G C G A T A C T G T A C G C G A T A G C T A G T C
T C A G T A G C G T A C A C T G A C T G C G T A C G T A T C A G G A C T T A C G T A C G A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTGGAAGTGGTTC
--TTAAGTGGT--
 A G T C A C G T A C T G A C T G C T G A C G T A C T A G C G A T A C T G T A C G C G A T A G C T A G T C
A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T

Gabpa/MA0062.2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGGAAGTGGTTC
CCGGAAGTGGC--
 A G T C A C G T A C T G A C T G C T G A C G T A C T A G C G A T A C T G T A C G C G A T A G C T A G T C
T A G C T G A C A C T G A C T G T C G A G C T A T C A G G A C T T C A G T C A G T G A C A C G T A C G T