Information for 3-GGCAGMCTCCAGGARG (Motif 5)

C T A G A T C G G T A C C G T A A C T G G T A C A G T C G C A T A G T C A T G C C T G A A C T G A T C G C G T A C T A G C T A G
Reverse Opposite:
G A T C A G C T C G A T A T G C A G T C A G C T A T C G A C T G C G T A A C T G C A T G A G T C A C G T A C T G A T G C A G T C
p-value:1e-12
log p-value:-2.989e+01
Information Content per bp:1.782
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.1 +/- 21.1bp
Average Position of motif in Background63.4 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGCAGMCTCCAGGARG
-BCAGACWA-------
 C T A G A T C G G T A C C G T A A C T G G T A C A G T C G C A T A G T C A T G C C T G A A C T G A T C G C G T A C T A G C T A G
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGCAGMCTCCAGGARG
-CCAGACRSVB-----
 C T A G A T C G G T A C C G T A A C T G G T A C A G T C G C A T A G T C A T G C C T G A A C T G A T C G C G T A C T A G C T A G
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGMCTCCAGGARG
TTCTAGAANNTTCCAGAANN
 A C G T A C G T A C G T A C G T C T A G A T C G G T A C C G T A A C T G G T A C A G T C G C A T A G T C A T G C C T G A A C T G A T C G C G T A C T A G C T A G
A C G T A C G T T A G C A G C T T C G A C T A G G T C A C T G A A T C G T A G C G A C T C A G T A T G C A G T C C T G A A C T G T C G A T C G A A T C G T A C G

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GGCAGMCTCCAGGARG
-----CTTCCNGGAA-
 C T A G A T C G G T A C C G T A A C T G G T A C A G T C G C A T A G T C A T G C C T G A A C T G A T C G C G T A C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GGCAGMCTCCAGGARG
AGGTGHCAGACA--------
 A C G T A C G T A C G T A C G T C T A G A T C G G T A C C G T A A C T G G T A C A G T C G C A T A G T C A T G C C T G A A C T G A T C G C G T A C T A G C T A G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GGCAGMCTCCAGGARG-
-------AVCAGGAAGT
 C T A G A T C G G T A C C G T A A C T G G T A C A G T C G C A T A G T C A T G C C T G A A C T G A T C G C G T A C T A G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A G C T A G C T G C A A C T G C T A G C G T A C G T A T C A G G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GGCAGMCTCCAGGARG
-CCAGACAG-------
 C T A G A T C G G T A C C G T A A C T G G T A C A G T C G C A T A G T C A T G C C T G A A C T G A T C G C G T A C T A G C T A G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:GGCAGMCTCCAGGARG-
-------ANCAGGATGT
 C T A G A T C G G T A C C G T A A C T G G T A C A G T C G C A T A G T C A T G C C T G A A C T G A T C G C G T A C T A G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GGCAGMCTCCAGGARG
-NNNCTTTCCAGGAAA
 C T A G A T C G G T A C C G T A A C T G G T A C A G T C G C A T A G T C A T G C C T G A A C T G A T C G C G T A C T A G C T A G
A C G T G A C T C G A T T C A G G A T C G A C T A G C T A G C T A G T C G A T C C G T A C T A G C T A G T C G A T C G A C T G A

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GGCAGMCTCCAGGARG
----NTTTCCNGGAAA
 C T A G A T C G G T A C C G T A A C T G G T A C A G T C G C A T A G T C A T G C C T G A A C T G A T C G C G T A C T A G C T A G
A C G T A C G T A C G T A C G T T C A G A G C T A C G T A C G T G T A C G A T C C G T A C T A G C A T G G T C A C G T A T C G A