Information for 25-MMCAAGTRTTRTATGS (Motif 44)

G T C A T G A C G T A C C G T A C G T A A C T G A C G T C T A G A C G T A C G T T C A G A C G T C T G A A C G T A C T G A T C G
Reverse Opposite:
A T G C A G T C C G T A A G C T C G T A A G C T C G T A G T C A G A T C C G T A G T A C C G A T A C G T A C T G A C T G A C G T
p-value:1e-7
log p-value:-1.700e+01
Information Content per bp:1.842
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.0 +/- 18.7bp
Average Position of motif in Background78.9 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CLOCK/MA0819.1/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:MMCAAGTRTTRTATGS
AACACGTGTT------
 G T C A T G A C G T A C C G T A C G T A A C T G A C G T C T A G A C G T A C G T T C A G A C G T C T G A A C G T A C T G A T C G
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.56
Offset:5
Orientation:forward strand
Alignment:MMCAAGTRTTRTATGS----
-----CCATTGTATGCAAAT
 G T C A T G A C G T A C C G T A C G T A A C T G A C G T C T A G A C G T A C G T T C A G A C G T C T G A A C G T A C T G A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

MYF6/MA0667.1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:MMCAAGTRTTRTATGS
AACAGCTGTT------
 G T C A T G A C G T A C C G T A C G T A A C T G A C G T C T A G A C G T A C G T T C A G A C G T C T G A A C G T A C T G A T C G
T C G A T C G A A G T C T C G A T C A G A G T C C G A T A T C G G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:MMCAAGTRTTRTATGS
AACAGGTGNT------
 G T C A T G A C G T A C C G T A C G T A A C T G A C G T C T A G A C G T A C G T T C A G A C G T C T G A A C G T A C T G A T C G
G C T A T G C A G T A C G C T A A T C G A T C G C A G T C T A G C A T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:MMCAAGTRTTRTATGS
-CCATGTGCTT-----
 G T C A T G A C G T A C C G T A C G T A A C T G A C G T C T A G A C G T A C G T T C A G A C G T C T G A A C G T A C T G A T C G
A C G T T G A C A G T C C G T A A G C T A C T G A C G T A C T G A T G C G A C T A G C T A C G T A C G T A C G T A C G T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:MMCAAGTRTTRTATGS
GGCACGTGTC------
 G T C A T G A C G T A C C G T A C G T A A C T G A C G T C T A G A C G T A C G T T C A G A C G T C T G A A C G T A C T G A T C G
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C A C G T A C G T A C G T A C G T A C G T A C G T

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:MMCAAGTRTTRTATGS
--CACGTGNT------
 G T C A T G A C G T A C C G T A C G T A A C T G A C G T C T A G A C G T A C G T T C A G A C G T C T G A A C G T A C T G A T C G
A C G T A C G T G A T C C G T A A T G C T A C G G A C T C T A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:MMCAAGTRTTRTATGS----
----NNNNTTGTGTGCTTNN
 G T C A T G A C G T A C C G T A C G T A A C T G A C G T C T A G A C G T A C G T T C A G A C G T C T G A A C G T A C T G A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

PB0043.1_Max_1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--MMCAAGTRTTRTATGS
TGACCACGTGGTCGGG--
 A C G T A C G T G T C A T G A C G T A C C G T A C G T A A C T G A C G T C T A G A C G T A C G T T C A G A C G T C T G A A C G T A C T G A T C G
C A G T C A T G T G C A T A G C G T A C C T G A A G T C T C A G G A C T A C T G A T C G A C G T A T G C T C A G C A T G C A T G A C G T A C G T

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--MMCAAGTRTTRTATGS
NNACCACGTGGT------
 A C G T A C G T G T C A T G A C G T A C C G T A C G T A A C T G A C G T C T A G A C G T A C G T T C A G A C G T C T G A A C G T A C T G A T C G
C G A T T C A G T C G A T G A C A G T C C G T A A G T C C T A G A C G T A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T