Information for 16-GGAGTCTTTATKA (Motif 41)

A C T G A C T G T C G A A C T G A C G T G T A C C A G T A C G T C A G T C T G A A C G T A C G T C G T A
Reverse Opposite:
G C A T G T C A C G T A G A C T G C T A G T C A G T C A A C T G C G T A T G A C A C G T G T A C G T A C
p-value:1e-8
log p-value:-1.965e+01
Information Content per bp:1.694
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif31.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets61.0 +/- 28.6bp
Average Position of motif in Background55.1 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA10/MA0899.1/Jaspar

Match Rank:1
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GGAGTCTTTATKA--
----NTTTTATTACN
 A C T G A C T G T C G A A C T G A C G T G T A C C A G T A C G T C A G T C T G A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GGAGTCTTTATKA-
-----TTTTATTGC
 A C T G A C T G T C G A A C T G A C G T G T A C C A G T A C G T C A G T C T G A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

MF0005.1_Forkhead_class/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GGAGTCTTTATKA
----TGTTTATTT
 A C T G A C T G T C G A A C T G A C G T G T A C C A G T A C G T C A G T C T G A A C G T A C G T C G T A
A C G T A C G T A C G T A C G T G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGAGTCTTTATKA
-GAATATTCAT--
 A C T G A C T G T C G A A C T G A C G T G T A C C A G T A C G T C A G T C T G A A C G T A C G T C G T A
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGAGTCTTTATKA
-TATTGTTTATT-
 A C T G A C T G T C G A A C T G A C G T G T A C C A G T A C G T C A G T C T G A A C G T A C G T C G T A
A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGAGTCTTTATKA-
----TTTTTATTGG
 A C T G A C T G T C G A A C T G A C G T G T A C C A G T A C G T C A G T C T G A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGAGTCTTTATKA-
----TTTTTATTGC
 A C T G A C T G T C G A A C T G A C G T G T A C C A G T A C G T C A G T C T G A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGAGTCTTTATKA-
----NTTTTATGAC
 A C T G A C T G T C G A A C T G A C G T G T A C C A G T A C G T C A G T C T G A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

Foxd3/MA0041.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGAGTCTTTATKA
-GAATGTTTGTTT
 A C T G A C T G T C G A A C T G A C G T G T A C C A G T A C G T C A G T C T G A A C G T A C G T C G T A
A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GGAGTCTTTATKA---
-----TTTTATGGCTN
 A C T G A C T G T C G A A C T G A C G T G T A C C A G T A C G T C A G T C T G A A C G T A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T