Information for 13-CAATTTACACAGC (Motif 34)

A G T C C T G A C G T A A C G T A C G T A C G T G C T A G T A C G C T A A G T C C G T A T A C G G T A C
Reverse Opposite:
A C T G A G T C C G A T C T A G C A G T A C T G C A G T C G T A C G T A C G T A C G A T A G C T A C T G
p-value:1e-8
log p-value:-1.987e+01
Information Content per bp:1.804
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets70.5 +/- 29.7bp
Average Position of motif in Background42.5 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0175.1_Sox4_2/Jaspar

Match Rank:1
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------CAATTTACACAGC
TNCNNAACAATTTTTNC---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T G A C G T A A C G T A C G T A C G T G C T A G T A C G C T A A G T C C G T A T A C G G T A C
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C A C G T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:2
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------CAATTTACACAGC
NNCNNAACAATTNT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T G A C G T A A C G T A C G T A C G T G C T A G T A C G C T A A G T C C G T A T A C G G T A C
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0009.1_Bsx/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CAATTTACACAGC
CAGGTAATTACCTCAG-
 A C G T A C G T A C G T A C G T A G T C C T G A C G T A A C G T A C G T A C G T G C T A G T A C G C T A A G T C C G T A T A C G G T A C
T G A C T G C A C T A G C A T G G A C T T G C A G T C A A C G T A C G T C T G A A T G C G A T C A G C T T A G C C T G A C T A G A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CAATTTACACAGC
--ATTTGCATA--
 A G T C C T G A C G T A A C G T A C G T A C G T G C T A G T A C G C T A A G T C C G T A T A C G G T A C
A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T

PB0177.1_Sox7_2/Jaspar

Match Rank:5
Score:0.60
Offset:-12
Orientation:reverse strand
Alignment:------------CAATTTACACAGC
NNCNNNCNCANACAATTAGNAC---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T G A C G T A A C G T A C G T A C G T G C T A G T A C G C T A A G T C C G T A T A C G G T A C
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAATTTACACAGC
--ATTTGCATA--
 A G T C C T G A C G T A A C G T A C G T A C G T G C T A G T A C G C T A A G T C C G T A T A C G G T A C
A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAATTTACACAGC-----
-NNTTTTCACACCTTNNN
 A G T C C T G A C G T A A C G T A C G T A C G T G C T A G T A C G C T A A G T C C G T A T A C G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

POU3F1/MA0786.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAATTTACACAGC
TAATTTGCATAA-
 A G T C C T G A C G T A A C G T A C G T A C G T G C T A G T A C G C T A A G T C C G T A T A C G G T A C
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAATTTACACAGC
-AATTTGCATANT
 A G T C C T G A C G T A A C G T A C G T A C G T G C T A G T A C G C T A A G T C C G T A T A C G G T A C
A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAATTTACACAGC
--ATTTGCATAA-
 A G T C C T G A C G T A A C G T A C G T A C G T G C T A G T A C G C T A A G T C C G T A T A C G G T A C
A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T