Information for 11-TCTCAGCGAGAGA (Motif 27)

A C G T A G T C A C G T G T A C C G T A C T A G A G T C A C T G C T G A A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A G C T A G T C A C T G A G T C A C G T A C T G C G T A C T A G C G T A
p-value:1e-9
log p-value:-2.207e+01
Information Content per bp:1.933
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.6 +/- 23.5bp
Average Position of motif in Background32.5 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TCTCAGCGAGAGA---
-TTGACCGAGAATTCC
 A C G T A G T C A C G T G T A C C G T A C T A G A G T C A C T G C T G A A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCTCAGCGAGAGA---
-NNNACCGAGAGTNNN
 A C G T A G T C A C G T G T A C C G T A C T A G A G T C A C T G C T G A A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCTCAGCGAGAGA
DCTCAGCAGG---
 A C G T A G T C A C G T G T A C C G T A C T A G A G T C A C T G C T G A A C T G C G T A A C T G C G T A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCTCAGCGAGAGA
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G T C A C G T G T A C C G T A C T A G A G T C A C T G C T G A A C T G C G T A A C T G C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCTCAGCGAGAGA
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G T C A C G T G T A C C G T A C T A G A G T C A C T G C T G A A C T G C G T A A C T G C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCTCAGCGAGAGA
GAGCACAGCAGGACA
 A C G T A C G T A C G T A G T C A C G T G T A C C G T A C T A G A G T C A C T G C T G A A C T G C G T A A C T G C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TCTCAGCGAGAGA--
DCHCAGCAGGRGGCC
 A C G T A G T C A C G T G T A C C G T A C T A G A G T C A C T G C T G A A C T G C G T A A C T G C G T A A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0138.1_Irf4_2/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCTCAGCGAGAGA---
-GNNACCGAGAATNNN
 A C G T A G T C A C G T G T A C C G T A C T A G A G T C A C T G C T G A A C T G C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TCTCAGCGAGAGA-
----GGCGGGAARN
 A C G T A G T C A C G T G T A C C G T A C T A G A G T C A C T G C T G A A C T G C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TCTCAGCGAGAGA
-CACAGCAGGGGG
 A C G T A G T C A C G T G T A C C G T A C T A G A G T C A C T G C T G A A C T G C G T A A C T G C G T A
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G