Information for 13-GTGCCAGGCAGGCCCC (Motif 23)

A C T G A C G T A C T G A G T C A G T C C G T A A C T G T A C G G A T C G T C A A C T G A C T G T A G C A T G C A G T C G T A C
Reverse Opposite:
A C T G A C T G A T C G A C T G G T A C A G T C C A G T C A T G A G T C A G T C C G A T A C T G C T A G A G T C G T C A A G T C
p-value:1e-10
log p-value:-2.310e+01
Information Content per bp:1.789
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.0 +/- 18.8bp
Average Position of motif in Background63.5 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTGCCAGGCAGGCCCC
AGGTGNCAGACAG-----
 A C G T A C G T A C T G A C G T A C T G A G T C A G T C C G T A A C T G T A C G G A T C G T C A A C T G A C T G T A G C A T G C A G T C G T A C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTGCCAGGCAGGCCCC
AGGTGHCAGACA------
 A C G T A C G T A C T G A C G T A C T G A G T C A G T C C G T A A C T G T A C G G A T C G T C A A C T G A C T G T A G C A T G C A G T C G T A C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTGCCAGGCAGGCCCC
-TCCCAGMCRAGCCCC
 A C T G A C G T A C T G A G T C A G T C C G T A A C T G T A C G G A T C G T C A A C T G A C T G T A G C A T G C A G T C G T A C
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GTGCCAGGCAGGCCCC
CGTGCCAAG--------
 A C G T A C T G A C G T A C T G A G T C A G T C C G T A A C T G T A C G G A T C G T C A A C T G A C T G T A G C A T G C A G T C G T A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GTGCCAGGCAGGCCCC
TTGCCAAG--------
 A C T G A C G T A C T G A G T C A G T C C G T A A C T G T A C G G A T C G T C A A C T G A C T G T A G C A T G C A G T C G T A C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GTGCCAGGCAGGCCCC
VBTGWCAGCB-------
 A C G T A C T G A C G T A C T G A G T C A G T C C G T A A C T G T A C G G A T C G T C A A C T G A C T G T A G C A T G C A G T C G T A C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GTGCCAGGCAGGCCCC
ATGCCAACC-------
 A C T G A C G T A C T G A G T C A G T C C G T A A C T G T A C G G A T C G T C A A C T G A C T G T A G C A T G C A G T C G T A C
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GTGCCAGGCAGGCCCC
ATGCCAGACN------
 A C T G A C G T A C T G A G T C A G T C C G T A A C T G T A C G G A T C G T C A A C T G A C T G T A G C A T G C A G T C G T A C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GTGCCAGGCAGGCCCC
-TGCCAA---------
 A C T G A C G T A C T G A G T C A G T C C G T A A C T G T A C G G A T C G T C A A C T G A C T G T A G C A T G C A G T C G T A C
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:10
Score:0.50
Offset:9
Orientation:forward strand
Alignment:GTGCCAGGCAGGCCCC---
---------AAGACCCYYN
 A C T G A C G T A C T G A G T C A G T C C G T A A C T G T A C G G A T C G T C A A C T G A C T G T A G C A T G C A G T C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C