Information for 5-AGAGTGMCCTAAG (Motif 12)

C G T A A C T G C G T A A C T G A C G T C A T G G T A C A G T C A G T C G A C T C G T A C G T A C T A G
Reverse Opposite:
A G T C A C G T A C G T C G T A A C T G A C T G C A G T G A T C C G T A A G T C A C G T A G T C A C G T
p-value:1e-11
log p-value:-2.552e+01
Information Content per bp:1.857
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 24.1bp
Average Position of motif in Background28.1 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGMCCTAAG--
GGGTGTGCCCAAAAGG
 A C G T C G T A A C T G C G T A A C T G A C G T C A T G G T A C A G T C A G T C G A C T C G T A C G T A C T A G A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGAGTGMCCTAAG
----TGACCTYA-
 C G T A A C T G C G T A A C T G A C G T C A T G G T A C A G T C A G T C G A C T C G T A C G T A C T A G
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----AGAGTGMCCTAAG
AGGNCANNGTGACCT---
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C G T C A T G G T A C A G T C A G T C G A C T C G T A C G T A C T A G
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:AGAGTGMCCTAAG
----TGACCT---
 C G T A A C T G C G T A A C T G A C G T C A T G G T A C A G T C A G T C G A C T C G T A C G T A C T A G
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGAGTGMCCTAAG
---GTGACCTT--
 C G T A A C T G C G T A A C T G A C G T C A T G G T A C A G T C A G T C G A C T C G T A C G T A C T A G
A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AGAGTGMCCTAAG-
----TGACCTARTT
 C G T A A C T G C G T A A C T G A C G T C A T G G T A C A G T C A G T C G A C T C G T A C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTGMCCTAAG
TTGAGTGSTT----
 A C G T C G T A A C T G C G T A A C T G A C G T C A T G G T A C A G T C A G T C G A C T C G T A C G T A C T A G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----AGAGTGMCCTAAG
GGTCANNGTGACCTN--
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C G T C A T G G T A C A G T C A G T C G A C T C G T A C G T A C T A G
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T A C G T A C G T

PPARG/MA0066.1/Jaspar

Match Rank:9
Score:0.51
Offset:-8
Orientation:reverse strand
Alignment:--------AGAGTGMCCTAAG
AGTAGGTCACNGTGACCTAC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C G T C A T G G T A C A G T C A G T C G A C T C G T A C G T A C T A G
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AGAGTGMCCTAAG--
---ATGCCCTGAGGC
 C G T A A C T G C G T A A C T G A C G T C A T G G T A C A G T C A G T C G A C T C G T A C G T A C T A G A C G T A C G T
A C G T A C G T A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C