Information for 10-TTTAATTHADGAAATT (Motif 13)

A C G T A C G T C G A T C G T A C G T A A C G T A C G T G C A T C G T A C A T G C T A G G T C A C G T A C G T A A C G T A C G T
Reverse Opposite:
C G T A G T C A A C G T A C G T A C G T A G T C G A T C A C G T C G T A C G T A C G T A C G A T A C G T C G T A G T C A C G T A
p-value:1e-10
log p-value:-2.479e+01
Information Content per bp:1.803
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.8 +/- 24.1bp
Average Position of motif in Background34.1 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0001.1_Arid3a_1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATTHADGAAATT
NNNTTTTAATTAANNNN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A A C G T A C G T G C A T C G T A C A T G C T A G G T C A C G T A C G T A A C G T A C G T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C A C G T A C G T A C G T

PH0095.1_Lhx5/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATTHADGAAATT
ANNATTTAATTAATTNN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A A C G T A C G T G C A T C G T A C A T G C T A G G T C A C G T A C G T A A C G T A C G T
T C G A C A T G C A G T C G T A C G A T G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T C A G T G A T C A T C G A C G T A C G T A C G T

PH0101.1_Lmx1b/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TTTAATTHADGAAATT
AGTTTTTAATTAATTTG---
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A A C G T A C G T G C A T C G T A C A T G C T A G G T C A C G T A C G T A A C G T A C G T
T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G A C G T A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TTTAATTHADGAAATT-
--TAATTCAATGAAGTG
 A C G T A C G T C G A T C G T A C G T A A C G T A C G T G C A T C G T A C A T G C T A G G T C A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

PH0069.1_Hoxc4/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TTTAATTHADGAAATT
CGAATTAATTAACAATA--
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A A C G T A C G T G C A T C G T A C A T G C T A G G T C A C G T A C G T A A C G T A C G T
T G A C T C A G G T C A C T G A G C A T G A C T G T C A C G T A C G A T A C G T C T G A C G T A A G T C G C T A T G C A G C A T G T C A A C G T A C G T

PH0100.1_Lmx1a/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TTTAATTHADGAAATT
CGAATTAATTAAAAACC--
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A A C G T A C G T G C A T C G T A C A T G C T A G G T C A C G T A C G T A A C G T A C G T
T A G C T A C G G C T A C G T A G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G T A G C T A G C T A G A T C A G T C A C G T A C G T

LMX1A/MA0702.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TTTAATTHADGAAATT
-TTAATTAA-------
 A C G T A C G T C G A T C G T A C G T A A C G T A C G T G C A T C G T A C A T G C T A G G T C A C G T A C G T A A C G T A C G T
A C G T A G C T G A C T C T G A G C T A G C A T C G A T C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0090.1_Lbx2/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATTHADGAAATT
TNNNATTAATTAANNCA---
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A A C G T A C G T G C A T C G T A C A T G C T A G G T C A C G T A C G T A A C G T A C G T
A G C T G A T C A T C G T G A C C T G A G A C T G A C T C G T A T C G A A G C T C G A T C T G A C T G A C A G T C A T G A T G C C G T A A C G T A C G T A C G T

PH0093.1_Lhx3/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATTHADGAAATT
NNTATTTAATTAATTNN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A A C G T A C G T G C A T C G T A C A T G C T A G G T C A C G T A C G T A A C G T A C G T
T G C A C A G T C A G T G C T A G C A T G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A A G C T C A G T G C A T A T G C A C G T A C G T A C G T

PH0009.1_Bsx/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TTTAATTHADGAAATT-----
-----NTNAGNTAATTACCTN
 A C G T A C G T C G A T C G T A C G T A A C G T A C G T G C A T C G T A C A T G C T A G G T C A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A C T A T C G T C G A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A G T A C G A T C A C G T A C T G