Information for 11-CCTTGTAAKM (Motif 16)

A T G C A G T C A G C T A C G T A C T G A C G T C G T A C G T A A C G T G T A C
Reverse Opposite:
A C T G G T C A A C G T A C G T C G T A A G T C C G T A C T G A C T A G A T C G
p-value:1e-6
log p-value:-1.419e+01
Information Content per bp:1.841
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif57.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets55.9 +/- 27.4bp
Average Position of motif in Background51.6 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCTTGTAAKM
CTTTGT----
 A T G C A G T C A G C T A C G T A C T G A C G T C G T A C G T A A C G T G T A C
A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:2
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CCTTGTAAKM
AGGVNCCTTTGT----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A G C T A C G T A C T G A C G T C G T A C G T A A C G T G T A C
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCTTGTAAKM---
NNNTTTNTAATACNG
 A C G T A C G T A T G C A G T C A G C T A C G T A C T G A C G T C G T A C G T A A C G T G T A C A C G T A C G T A C G T
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTTGTAAKM-
GCTCGTAAAAA
 A T G C A G T C A G C T A C G T A C T G A C G T C G T A C G T A A C G T G T A C A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCTTGTAAKM
CCWTTGTYYB-
 A C G T A T G C A G T C A G C T A C G T A C T G A C G T C G T A C G T A A C G T G T A C
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCTTGTAAKM---
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A T G C A G T C A G C T A C G T A C T G A C G T C G T A C G T A A C G T G T A C A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PB0174.1_Sox30_2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCTTGTAAKM---
TAAGATTATAATACGG
 A C G T A C G T A C G T A T G C A G T C A G C T A C G T A C T G A C G T C G T A C G T A A C G T G T A C A C G T A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

PB0119.1_Foxa2_2/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCTTGTAAKM---
NCNTTTGTTATTTNN
 A C G T A C G T A T G C A G T C A G C T A C G T A C T G A C G T C G T A C G T A A C G T G T A C A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCTTGTAAKM
--YTGWCADY
 A T G C A G T C A G C T A C G T A C T G A C G T C G T A C G T A A C G T G T A C
A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCTTGTAAKM
CCATTGTTNY-
 A C G T A T G C A G T C A G C T A C G T A C T G A C G T C G T A C G T A A C G T G T A C
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T