Information for 7-CAGTCTTGTGTGG (Motif 8)

G T A C G C T A A T C G A G C T A G T C G A C T C G A T A T C G C G A T A T C G C G A T C T A G C T A G
Reverse Opposite:
G A T C A G T C G C T A A T G C C G T A T A G C C G T A C T G A C T A G T C G A T A G C C G A T A C T G
p-value:1e-12
log p-value:-2.887e+01
Information Content per bp:1.664
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.27%
Number of Background Sequences with motif110.8
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets39.1 +/- 23.9bp
Average Position of motif in Background52.9 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL002.1_INR/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGTCTTGTGTGG
TCAGTCTT------
 A C G T G T A C G C T A A T C G A G C T A G T C G A C T C G A T A T C G C G A T A T C G C G A T C T A G C T A G
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCTTGTGTGG-
SCAGYCADGCATGAC
 A C G T G T A C G C T A A T C G A G C T A G T C G A C T C G A T A T C G C G A T A T C G C G A T C T A G C T A G A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGTCTTGTGTGG--
----CTTGAGTGGCT
 G T A C G C T A A T C G A G C T A G T C G A C T C G A T A T C G C G A T A T C G C G A T C T A G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PB0168.1_Sox14_2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCTTGTGTGG-
NNNCCATTGTGTNAN
 A C G T G T A C G C T A A T C G A G C T A G T C G A C T C G A T A T C G C G A T A T C G C G A T C T A G C T A G A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGTCTTGTGTGG--
TGCAGTCATGCGTGACG
 A C G T A C G T G T A C G C T A A T C G A G C T A G T C G A C T C G A T A T C G C G A T A T C G C G A T C T A G C T A G A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGTCTTGTGTGG--
GCAGCCAAGCGTGACN
 A C G T G T A C G C T A A T C G A G C T A G T C G A C T C G A T A T C G C G A T A T C G C G A T C T A G C T A G A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CAGTCTTGTGTGG----
-NNNNTTGTGTGCTTNN
 G T A C G C T A A T C G A G C T A G T C G A C T C G A T A T C G C G A T A T C G C G A T C T A G C T A G A C G T A C G T A C G T A C G T
A C G T A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

PAX1/MA0779.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CAGTCTTGTGTGG--
NGCANTCATGCGTGACG
 A C G T A C G T G T A C G C T A A T C G A G C T A G T C G A C T C G A T A T C G C G A T A T C G C G A T C T A G C T A G A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CAGTCTTGTGTGG
-----TWGTCTGV
 G T A C G C T A A T C G A G C T A G T C G A C T C G A T A T C G C G A T A T C G C G A T C T A G C T A G
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CAGTCTTGTGTGG
CACAGN---------
 A C G T A C G T G T A C G C T A A T C G A G C T A G T C G A C T C G A T A T C G C G A T A T C G C G A T C T A G C T A G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T